Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
CUX1P39880 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.34
CUX1P39880 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX1P39880 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC29.64■■■□□ 2.34
CUX1P39880 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX1P39880 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC29.64■■■□□ 2.34
CUX1P39880 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC29.64■■■□□ 2.34
CUX1P39880 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC29.64■■■□□ 2.34
CUX1P39880 AC105339.1-204ENST00000636249 355 ntBASIC29.64■■■□□ 2.34
CUX1P39880 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC29.64■■■□□ 2.34
CUX1P39880 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX1P39880 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CUX1P39880 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.33
CUX1P39880 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC29.64■■■□□ 2.33
CUX1P39880 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
CUX1P39880 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX1P39880 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX1P39880 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC29.63■■■□□ 2.33
CUX1P39880 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CUX1P39880 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC29.63■■■□□ 2.33
CUX1P39880 AC074386.1-202ENST00000463561 864 ntBASIC29.63■■■□□ 2.33
CUX1P39880 CCND1-203ENST00000536559 553 ntTSL 3 BASIC29.63■■■□□ 2.33
CUX1P39880 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC29.63■■■□□ 2.33
CUX1P39880 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX1P39880 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC29.63■■■□□ 2.33
CUX1P39880 AL096828.2-201ENST00000567259 1965 ntBASIC29.63■■■□□ 2.33
CUX1P39880 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
CUX1P39880 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CUX1P39880 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CUX1P39880 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CUX1P39880 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC29.62■■■□□ 2.33
CUX1P39880 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC29.62■■■□□ 2.33
CUX1P39880 DDX43P3-201ENST00000441064 443 ntBASIC29.62■■■□□ 2.33
CUX1P39880 AC023141.5-201ENST00000458585 616 ntBASIC29.62■■■□□ 2.33
CUX1P39880 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC29.62■■■□□ 2.33
CUX1P39880 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 GGTLC5P-201ENST00000617623 998 ntBASIC29.62■■■□□ 2.33
CUX1P39880 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CUX1P39880 AC097637.2-201ENST00000624096 1997 ntBASIC29.62■■■□□ 2.33
CUX1P39880 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 AC009949.1-201ENST00000623048 1830 ntBASIC29.62■■■□□ 2.33
CUX1P39880 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC29.62■■■□□ 2.33
CUX1P39880 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CUX1P39880 AC006116.8-202ENST00000587620 1550 ntBASIC29.62■■■□□ 2.33
CUX1P39880 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC29.61■■■□□ 2.33
CUX1P39880 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
CUX1P39880 HLA-J-203ENST00000494367 1087 ntBASIC29.61■■■□□ 2.33
CUX1P39880 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC29.61■■■□□ 2.33
CUX1P39880 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC29.61■■■□□ 2.33
CUX1P39880 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC29.61■■■□□ 2.33
CUX1P39880 CROCCP3-202ENST00000420820 1947 ntBASIC29.61■■■□□ 2.33
CUX1P39880 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC29.61■■■□□ 2.33
CUX1P39880 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC29.61■■■□□ 2.33
CUX1P39880 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC29.61■■■□□ 2.33
CUX1P39880 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
CUX1P39880 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CUX1P39880 AC093520.2-201ENST00000561830 333 ntBASIC29.61■■■□□ 2.33
CUX1P39880 AL390955.2-201ENST00000603032 514 ntBASIC29.61■■■□□ 2.33
CUX1P39880 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC29.6■■■□□ 2.33
CUX1P39880 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC29.6■■■□□ 2.33
CUX1P39880 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC29.6■■■□□ 2.33
CUX1P39880 AL590787.1-201ENST00000568856 1315 ntBASIC29.6■■■□□ 2.33
CUX1P39880 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC29.6■■■□□ 2.33
CUX1P39880 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 IGHV3OR16-6-201ENST00000568775 360 ntBASIC29.6■■■□□ 2.33
CUX1P39880 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC29.6■■■□□ 2.33
CUX1P39880 AC023141.13-201ENST00000604991 943 ntBASIC29.6■■■□□ 2.33
CUX1P39880 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CUX1P39880 ACTL9-202ENST00000612068 1252 ntBASIC29.6■■■□□ 2.33
CUX1P39880 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC29.6■■■□□ 2.33
CUX1P39880 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
CUX1P39880 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC29.59■■■□□ 2.33
CUX1P39880 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
CUX1P39880 ACTG1P4-201ENST00000425123 1122 ntBASIC29.59■■■□□ 2.33
CUX1P39880 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC29.59■■■□□ 2.33
CUX1P39880 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 MED16-214ENST00000617672 554 ntTSL 5 BASIC29.59■■■□□ 2.33
CUX1P39880 AC009093.7-201ENST00000623853 1223 ntBASIC29.59■■■□□ 2.33
CUX1P39880 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC29.59■■■□□ 2.33
CUX1P39880 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
CUX1P39880 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC29.58■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms