Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL11A1P12107 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL11A1P12107 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL11A1P12107 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.14■□□□□ 0.81
COL11A1P12107 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.14■□□□□ 0.81
COL11A1P12107 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.14■□□□□ 0.81
COL11A1P12107 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.14■□□□□ 0.81
COL11A1P12107 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.14■□□□□ 0.81
COL11A1P12107 RPS15P9-201ENST00000494093 319 ntBASIC20.14■□□□□ 0.81
COL11A1P12107 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.14■□□□□ 0.81
COL11A1P12107 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.14■□□□□ 0.81
COL11A1P12107 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
COL11A1P12107 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL11A1P12107 COX5BP2-201ENST00000392354 334 ntBASIC20.13■□□□□ 0.81
COL11A1P12107 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.13■□□□□ 0.81
COL11A1P12107 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.13■□□□□ 0.81
COL11A1P12107 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 GPR89P-201ENST00000407924 1495 ntBASIC20.13■□□□□ 0.81
COL11A1P12107 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL11A1P12107 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 MCCD1P2-201ENST00000423228 335 ntBASIC20.13■□□□□ 0.81
COL11A1P12107 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.13■□□□□ 0.81
COL11A1P12107 AC004967.1-201ENST00000453589 447 ntBASIC20.13■□□□□ 0.81
COL11A1P12107 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.13■□□□□ 0.81
COL11A1P12107 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 AC010507.1-201ENST00000633895 436 ntBASIC20.13■□□□□ 0.81
COL11A1P12107 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.13■□□□□ 0.81
COL11A1P12107 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL11A1P12107 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL11A1P12107 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.12■□□□□ 0.81
COL11A1P12107 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
COL11A1P12107 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 MRPL20P1-201ENST00000400819 433 ntBASIC20.12■□□□□ 0.81
COL11A1P12107 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.12■□□□□ 0.81
COL11A1P12107 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.12■□□□□ 0.81
COL11A1P12107 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.12■□□□□ 0.81
COL11A1P12107 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL11A1P12107 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL11A1P12107 AL590787.1-201ENST00000568856 1315 ntBASIC20.11■□□□□ 0.81
COL11A1P12107 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.11■□□□□ 0.81
COL11A1P12107 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 AC112482.1-201ENST00000492080 688 ntBASIC20.11■□□□□ 0.81
COL11A1P12107 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 AL513190.1-201ENST00000621254 727 ntBASIC20.11■□□□□ 0.81
COL11A1P12107 AC134684.3-201ENST00000641758 218 ntBASIC20.11■□□□□ 0.81
COL11A1P12107 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms