Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
SHOX2O60902 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.87■□□□□ 0.45
SHOX2O60902 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.87■□□□□ 0.45
SHOX2O60902 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.87■□□□□ 0.45
SHOX2O60902 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SHOX2O60902 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SHOX2O60902 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.87■□□□□ 0.45
SHOX2O60902 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHOX2O60902 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.86■□□□□ 0.45
SHOX2O60902 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.86■□□□□ 0.45
SHOX2O60902 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SHOX2O60902 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SHOX2O60902 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.86■□□□□ 0.45
SHOX2O60902 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SHOX2O60902 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.86■□□□□ 0.45
SHOX2O60902 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.86■□□□□ 0.45
SHOX2O60902 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SHOX2O60902 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHOX2O60902 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.86■□□□□ 0.45
SHOX2O60902 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 HCG11-201ENST00000411553 5696 ntBASIC17.85■□□□□ 0.45
SHOX2O60902 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
SHOX2O60902 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.85■□□□□ 0.45
SHOX2O60902 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 AL137784.2-201ENST00000607332 1000 ntBASIC17.85■□□□□ 0.45
SHOX2O60902 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.85■□□□□ 0.45
SHOX2O60902 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHOX2O60902 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.85■□□□□ 0.45
SHOX2O60902 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SHOX2O60902 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.84■□□□□ 0.45
SHOX2O60902 AC132938.6-201ENST00000623828 1655 ntBASIC17.84■□□□□ 0.45
SHOX2O60902 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms