Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 NOC2LP2-201ENST00000407594 1944 ntBASIC19.51■□□□□ 0.71
CLDN3O15551 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.51■□□□□ 0.71
CLDN3O15551 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CLDN3O15551 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CLDN3O15551 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.5■□□□□ 0.71
CLDN3O15551 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 POM121L3P-201ENST00000419331 1163 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.5■□□□□ 0.71
CLDN3O15551 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.5■□□□□ 0.71
CLDN3O15551 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.5■□□□□ 0.71
CLDN3O15551 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.5■□□□□ 0.71
CLDN3O15551 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 AC009533.2-201ENST00000543664 586 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 KRT126P-201ENST00000549467 1181 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.5■□□□□ 0.71
CLDN3O15551 BNIP3P18-201ENST00000593976 575 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.5■□□□□ 0.71
CLDN3O15551 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CLDN3O15551 AC068880.1-201ENST00000507289 2297 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.5■□□□□ 0.71
CLDN3O15551 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 AC100803.2-201ENST00000562459 1963 ntBASIC19.5■□□□□ 0.71
CLDN3O15551 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CLDN3O15551 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CLDN3O15551 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 TSPY19P-201ENST00000418461 509 ntBASIC19.49■□□□□ 0.71
CLDN3O15551 TSPY18P-201ENST00000441642 509 ntBASIC19.49■□□□□ 0.71
CLDN3O15551 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.49■□□□□ 0.71
CLDN3O15551 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.49■□□□□ 0.71
CLDN3O15551 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.49■□□□□ 0.71
CLDN3O15551 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
CLDN3O15551 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.49■□□□□ 0.71
CLDN3O15551 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 HTR7P1-202ENST00000624664 4411 ntBASIC19.49■□□□□ 0.71
CLDN3O15551 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 AC097374.2-201ENST00000618617 1306 ntBASIC19.49■□□□□ 0.71
CLDN3O15551 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLDN3O15551 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CLDN3O15551 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.48■□□□□ 0.71
CLDN3O15551 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.48■□□□□ 0.71
CLDN3O15551 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.48■□□□□ 0.71
CLDN3O15551 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.48■□□□□ 0.71
CLDN3O15551 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 AL450487.1-201ENST00000426799 995 ntBASIC19.48■□□□□ 0.71
CLDN3O15551 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.48■□□□□ 0.71
CLDN3O15551 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.48■□□□□ 0.71
CLDN3O15551 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLDN3O15551 AC096582.2-201ENST00000510860 516 ntBASIC19.48■□□□□ 0.71
CLDN3O15551 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.48■□□□□ 0.71
CLDN3O15551 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms