Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CDCA3Q99618 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CDCA3Q99618 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CDCA3Q99618 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.49■□□□□ 0.55
CDCA3Q99618 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.49■□□□□ 0.55
CDCA3Q99618 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.49■□□□□ 0.55
CDCA3Q99618 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.49■□□□□ 0.55
CDCA3Q99618 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.49■□□□□ 0.55
CDCA3Q99618 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.49■□□□□ 0.55
CDCA3Q99618 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.49■□□□□ 0.55
CDCA3Q99618 AC023141.13-201ENST00000604991 943 ntBASIC18.49■□□□□ 0.55
CDCA3Q99618 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CDCA3Q99618 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.49■□□□□ 0.55
CDCA3Q99618 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.49■□□□□ 0.55
CDCA3Q99618 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.49■□□□□ 0.55
CDCA3Q99618 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CDCA3Q99618 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.48■□□□□ 0.55
CDCA3Q99618 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 STK19B-204ENST00000512515 211 ntBASIC18.48■□□□□ 0.55
CDCA3Q99618 CFL1-212ENST00000531413 636 ntTSL 3 BASIC18.48■□□□□ 0.55
CDCA3Q99618 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.48■□□□□ 0.55
CDCA3Q99618 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
CDCA3Q99618 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.48■□□□□ 0.55
CDCA3Q99618 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.48■□□□□ 0.55
CDCA3Q99618 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.48■□□□□ 0.55
CDCA3Q99618 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.48■□□□□ 0.55
CDCA3Q99618 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.48■□□□□ 0.55
CDCA3Q99618 AC019129.2-201ENST00000609837 1235 ntBASIC18.48■□□□□ 0.55
CDCA3Q99618 AC093028.1-201ENST00000622998 982 ntBASIC18.48■□□□□ 0.55
CDCA3Q99618 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.48■□□□□ 0.55
CDCA3Q99618 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CDCA3Q99618 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.48■□□□□ 0.55
CDCA3Q99618 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.47■□□□□ 0.55
CDCA3Q99618 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 PTCHD3P3-201ENST00000403073 906 ntBASIC18.47■□□□□ 0.55
CDCA3Q99618 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.47■□□□□ 0.55
CDCA3Q99618 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.47■□□□□ 0.55
CDCA3Q99618 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.47■□□□□ 0.55
CDCA3Q99618 STK25P1-201ENST00000585406 838 ntBASIC18.47■□□□□ 0.55
CDCA3Q99618 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.47■□□□□ 0.55
CDCA3Q99618 AL096865.1-201ENST00000606796 927 ntBASIC18.47■□□□□ 0.55
CDCA3Q99618 AC116407.2-201ENST00000613639 860 ntBASIC18.47■□□□□ 0.55
CDCA3Q99618 AL513210.1-201ENST00000629608 234 ntBASIC18.47■□□□□ 0.55
CDCA3Q99618 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.47■□□□□ 0.55
CDCA3Q99618 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.47■□□□□ 0.55
CDCA3Q99618 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDCA3Q99618 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms