Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC008667.4-201ENST00000607370 168 ntBASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC88AQ3V6T2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 AC132938.6-201ENST00000623828 1655 ntBASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 AC023141.5-201ENST00000458585 616 ntBASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 AC069262.1-201ENST00000539058 672 ntBASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 AC004877.2-201ENST00000623941 599 ntBASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 Z92544.3-201ENST00000624747 417 ntBASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC88AQ3V6T2 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.7■■□□□ 1.07
CCDC88AQ3V6T2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 AC093503.3-201ENST00000624917 2352 ntBASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
CCDC88AQ3V6T2 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 AC004461.1-201ENST00000412461 403 ntBASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 AC004449.1-201ENST00000564240 433 ntBASIC21.69■■□□□ 1.06
CCDC88AQ3V6T2 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 IGLL3P-201ENST00000412472 434 ntBASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 AC068137.2-201ENST00000605408 478 ntBASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC88AQ3V6T2 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms