Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 AC096582.2-201ENST00000510860 516 ntBASIC16.54■□□□□ 0.24
RNF4P78317 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
RNF4P78317 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.54■□□□□ 0.24
RNF4P78317 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RNF4P78317 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RNF4P78317 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.54■□□□□ 0.24
RNF4P78317 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 AC100803.2-201ENST00000562459 1963 ntBASIC16.53■□□□□ 0.24
RNF4P78317 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.53■□□□□ 0.24
RNF4P78317 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.53■□□□□ 0.24
RNF4P78317 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 AC097374.2-201ENST00000618617 1306 ntBASIC16.53■□□□□ 0.24
RNF4P78317 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 NUS1P2-201ENST00000417358 873 ntBASIC16.53■□□□□ 0.24
RNF4P78317 AL450487.1-201ENST00000426799 995 ntBASIC16.53■□□□□ 0.24
RNF4P78317 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.53■□□□□ 0.24
RNF4P78317 KRT18P31-201ENST00000506277 1292 ntBASIC16.53■□□□□ 0.24
RNF4P78317 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.53■□□□□ 0.24
RNF4P78317 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.53■□□□□ 0.24
RNF4P78317 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.53■□□□□ 0.24
RNF4P78317 AC091304.2-201ENST00000564639 760 ntBASIC16.53■□□□□ 0.24
RNF4P78317 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.53■□□□□ 0.24
RNF4P78317 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.53■□□□□ 0.24
RNF4P78317 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.53■□□□□ 0.24
RNF4P78317 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
RNF4P78317 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.53■□□□□ 0.24
RNF4P78317 TP73-AS1-210ENST00000637775 1455 ntBASIC16.53■□□□□ 0.24
RNF4P78317 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RNF4P78317 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.53■□□□□ 0.24
RNF4P78317 AC090340.1-201ENST00000620778 4980 ntBASIC16.53■□□□□ 0.24
RNF4P78317 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 NEFHP1-201ENST00000412845 2629 ntBASIC16.52■□□□□ 0.24
RNF4P78317 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
RNF4P78317 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms