Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USHBP1Q8N6Y0 AC132938.5-201ENST00000624980 1813 ntBASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 AC006504.4-201ENST00000592118 1568 ntBASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 COX5BP2-201ENST00000392354 334 ntBASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 MIR1199-201ENST00000621445 119 ntBASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USHBP1Q8N6Y0 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AC006557.2-201ENST00000592985 1240 ntBASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AP001160.2-201ENST00000596071 487 ntBASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AC005593.1-201ENST00000624894 515 ntBASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AL049757.1-201ENST00000616842 1596 ntBASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 AP000974.1-201ENST00000623909 2387 ntBASIC23.48■■□□□ 1.35
USHBP1Q8N6Y0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 AC136632.2-201ENST00000512891 861 ntBASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 DUTP2-201ENST00000519164 463 ntBASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 AC134684.3-201ENST00000641758 218 ntBASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USHBP1Q8N6Y0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 PRYP5-201ENST00000451909 266 ntBASIC23.46■■□□□ 1.35
USHBP1Q8N6Y0 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms