Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 GRAMD4P1-201ENST00000435181 1110 ntBASIC13.67□□□□□ -0.22
HLA-DMBP28068 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ETFA-216ENST00000560726 942 ntTSL 3 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HLA-DMBP28068 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HLA-DMBP28068 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 AC108860.2-201ENST00000562760 2183 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 AC132938.6-201ENST00000623828 1655 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 TERF1P1-201ENST00000311003 1181 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 GXYLT1P6-201ENST00000456472 1187 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 SEC1P-202ENST00000473944 940 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 AC009065.1-201ENST00000564055 1225 ntBASIC13.66□□□□□ -0.22
HLA-DMBP28068 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 NT5C-210ENST00000582160 860 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DMBP28068 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DMBP28068 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DMBP28068 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DMBP28068 AC010653.2-201ENST00000623505 997 ntBASIC13.65□□□□□ -0.22
HLA-DMBP28068 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms