Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.39■□□□□ 0.37
UBFD1O14562 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 KRT8P47-201ENST00000604727 1398 ntBASIC17.39■□□□□ 0.37
UBFD1O14562 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.39■□□□□ 0.37
UBFD1O14562 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
UBFD1O14562 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.38■□□□□ 0.37
UBFD1O14562 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
UBFD1O14562 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 AL138966.2-201ENST00000621997 464 ntBASIC17.38■□□□□ 0.37
UBFD1O14562 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.38■□□□□ 0.37
UBFD1O14562 LINC01568-207ENST00000641790 1380 ntBASIC17.38■□□□□ 0.37
UBFD1O14562 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.38■□□□□ 0.37
UBFD1O14562 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
UBFD1O14562 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.37■□□□□ 0.37
UBFD1O14562 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.37■□□□□ 0.37
UBFD1O14562 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.37■□□□□ 0.37
UBFD1O14562 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 AC079602.3-201ENST00000623931 403 ntBASIC17.37■□□□□ 0.37
UBFD1O14562 AC141257.4-201ENST00000634557 245 ntBASIC17.37■□□□□ 0.37
UBFD1O14562 AC136944.6-201ENST00000634818 245 ntBASIC17.37■□□□□ 0.37
UBFD1O14562 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
UBFD1O14562 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.37■□□□□ 0.37
UBFD1O14562 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
UBFD1O14562 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.37■□□□□ 0.37
UBFD1O14562 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
UBFD1O14562 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
UBFD1O14562 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
UBFD1O14562 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
UBFD1O14562 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.36■□□□□ 0.37
UBFD1O14562 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.36■□□□□ 0.37
UBFD1O14562 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
UBFD1O14562 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms