Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGN4O00479 AC004263.2-201ENST00000617183 678 ntBASIC16.67■□□□□ 0.26
HMGN4O00479 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGN4O00479 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.67■□□□□ 0.26
HMGN4O00479 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HMGN4O00479 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
HMGN4O00479 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HMGN4O00479 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 AC117947.1-201ENST00000427448 529 ntBASIC16.66■□□□□ 0.26
HMGN4O00479 KRT18P48-201ENST00000434763 852 ntBASIC16.66■□□□□ 0.26
HMGN4O00479 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.66■□□□□ 0.26
HMGN4O00479 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HMGN4O00479 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.66■□□□□ 0.26
HMGN4O00479 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HMGN4O00479 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
HMGN4O00479 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HMGN4O00479 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 SIRPAP1-201ENST00000448467 1770 ntBASIC16.66■□□□□ 0.26
HMGN4O00479 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
HMGN4O00479 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGN4O00479 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
HMGN4O00479 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HMGN4O00479 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.66■□□□□ 0.26
HMGN4O00479 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.66■□□□□ 0.26
HMGN4O00479 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 AL138688.1-201ENST00000624851 1594 ntBASIC16.65■□□□□ 0.26
HMGN4O00479 REXO1L11P-201ENST00000620964 1927 ntBASIC16.65■□□□□ 0.26
HMGN4O00479 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGN4O00479 AC092597.1-201ENST00000487352 616 ntBASIC16.65■□□□□ 0.26
HMGN4O00479 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.65■□□□□ 0.26
HMGN4O00479 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
HMGN4O00479 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.65■□□□□ 0.26
HMGN4O00479 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.65■□□□□ 0.26
HMGN4O00479 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGN4O00479 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.65■□□□□ 0.26
HMGN4O00479 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.65■□□□□ 0.26
HMGN4O00479 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HMGN4O00479 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
HMGN4O00479 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 HLA-J-201ENST00000462773 1622 ntBASIC16.64■□□□□ 0.25
HMGN4O00479 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGN4O00479 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.64■□□□□ 0.25
HMGN4O00479 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 AC005521.1-201ENST00000393351 872 ntBASIC16.64■□□□□ 0.25
HMGN4O00479 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.64■□□□□ 0.25
HMGN4O00479 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HMGN4O00479 FAM8A6P-201ENST00000407496 1135 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms