Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC39Q9UFE4 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
CCDC39Q9UFE4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 LINC01568-207ENST00000641790 1380 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 AC046158.3-201ENST00000624947 2558 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 ECEL1P2-202ENST00000465689 757 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 AC112497.1-201ENST00000624824 639 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 FLJ13224-201ENST00000313737 1514 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 AL163051.1-201ENST00000569214 1512 ntBASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC39Q9UFE4 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 HMGA1P5-201ENST00000412453 271 ntBASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC39Q9UFE4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC39Q9UFE4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms