Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.78■□□□□ 0.44
TRIM39Q9HCM9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 AC022898.2-201ENST00000616822 1312 ntBASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 AC112698.1-201ENST00000510299 916 ntBASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 AC012615.1-201ENST00000565797 1299 ntBASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TRIM39Q9HCM9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 BICD1-207ENST00000551848 1962 ntBASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TRIM39Q9HCM9 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM39Q9HCM9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 REXO1L9P-201ENST00000604264 2108 ntBASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 KRT17P6-201ENST00000453795 1220 ntBASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 AC104819.1-201ENST00000504587 486 ntBASIC17.75■□□□□ 0.43
TRIM39Q9HCM9 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms