Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 RASA4CP-201ENST00000424092 1398 ntBASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLRN3Q8NCR9 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 AC008764.7-201ENST00000593779 1081 ntBASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 AC112777.1-201ENST00000540175 1423 ntBASIC14.32□□□□□ -0.12
CLRN3Q8NCR9 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CICP14-201ENST00000629111 2732 ntBASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 AC116351.2-201ENST00000606540 1585 ntBASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 SERP1-208ENST00000491660 830 ntTSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.31□□□□□ -0.12
CLRN3Q8NCR9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLRN3Q8NCR9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms