Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.64■□□□□ 0.57
PTPN9P43378 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.64■□□□□ 0.57
PTPN9P43378 AC124864.1-201ENST00000623408 392 ntBASIC18.64■□□□□ 0.57
PTPN9P43378 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
PTPN9P43378 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTPN9P43378 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.63■□□□□ 0.57
PTPN9P43378 AL845331.1-201ENST00000424978 1190 ntBASIC18.63■□□□□ 0.57
PTPN9P43378 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
PTPN9P43378 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.63■□□□□ 0.57
PTPN9P43378 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN9P43378 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PTPN9P43378 IGHV3-41-201ENST00000613121 348 ntBASIC18.63■□□□□ 0.57
PTPN9P43378 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PTPN9P43378 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN9P43378 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PTPN9P43378 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
PTPN9P43378 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN9P43378 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN9P43378 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN9P43378 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
PTPN9P43378 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 ARMC10P1-201ENST00000313754 855 ntBASIC18.62■□□□□ 0.57
PTPN9P43378 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 AC096633.1-201ENST00000422446 749 ntBASIC18.62■□□□□ 0.57
PTPN9P43378 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.62■□□□□ 0.57
PTPN9P43378 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN9P43378 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.62■□□□□ 0.57
PTPN9P43378 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.62■□□□□ 0.57
PTPN9P43378 AL358472.4-201ENST00000633140 710 ntBASIC18.62■□□□□ 0.57
PTPN9P43378 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.62■□□□□ 0.57
PTPN9P43378 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.62■□□□□ 0.57
PTPN9P43378 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PTPN9P43378 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN9P43378 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN9P43378 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN9P43378 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN9P43378 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
PTPN9P43378 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN9P43378 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PTPN9P43378 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN9P43378 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms