Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ELL2P1-201ENST00000413990 1906 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.1■□□□□ 0.33
COL5A1P20908 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.1■□□□□ 0.33
COL5A1P20908 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL5A1P20908 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.1■□□□□ 0.33
COL5A1P20908 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 AL805961.1-202ENST00000641562 540 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 AC092865.6-201ENST00000642101 219 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
COL5A1P20908 AC004817.3-201ENST00000602957 2129 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 AC006504.4-201ENST00000592118 1568 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL5A1P20908 AP000344.2-201ENST00000512987 629 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.1■□□□□ 0.33
COL5A1P20908 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.1■□□□□ 0.33
COL5A1P20908 AL596442.2-201ENST00000610240 980 ntBASIC17.1■□□□□ 0.33
COL5A1P20908 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.1■□□□□ 0.33
COL5A1P20908 WIZP1-201ENST00000531444 2299 ntBASIC17.09■□□□□ 0.33
COL5A1P20908 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A1P20908 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A1P20908 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 AL020989.1-201ENST00000422979 469 ntBASIC17.09■□□□□ 0.33
COL5A1P20908 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.09■□□□□ 0.33
COL5A1P20908 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A1P20908 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A1P20908 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A1P20908 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A1P20908 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.09■□□□□ 0.33
COL5A1P20908 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A1P20908 MIR4751-201ENST00000578027 74 ntBASIC17.09■□□□□ 0.33
COL5A1P20908 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.09■□□□□ 0.33
COL5A1P20908 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.09■□□□□ 0.33
COL5A1P20908 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.09■□□□□ 0.33
COL5A1P20908 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL5A1P20908 AC005082.1-201ENST00000413042 2259 ntBASIC17.09■□□□□ 0.33
COL5A1P20908 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.09■□□□□ 0.33
COL5A1P20908 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
COL5A1P20908 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A1P20908 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
COL5A1P20908 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A1P20908 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.08■□□□□ 0.33
COL5A1P20908 HTR5BP-201ENST00000430851 1154 ntBASIC17.08■□□□□ 0.33
COL5A1P20908 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.08■□□□□ 0.33
COL5A1P20908 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
COL5A1P20908 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL5A1P20908 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.08■□□□□ 0.32
COL5A1P20908 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.08■□□□□ 0.32
COL5A1P20908 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL5A1P20908 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 CNN2P11-201ENST00000429351 262 ntBASIC17.07■□□□□ 0.32
COL5A1P20908 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A1P20908 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A1P20908 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A1P20908 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.07■□□□□ 0.32
COL5A1P20908 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.07■□□□□ 0.32
COL5A1P20908 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.07■□□□□ 0.32
COL5A1P20908 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
COL5A1P20908 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.07■□□□□ 0.32
COL5A1P20908 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL5A1P20908 RPS15P9-201ENST00000494093 319 ntBASIC17.07■□□□□ 0.32
COL5A1P20908 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.07■□□□□ 0.32
COL5A1P20908 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.07■□□□□ 0.32
COL5A1P20908 PDPK2P-202ENST00000562415 1191 ntBASIC17.07■□□□□ 0.32
COL5A1P20908 MIR4469-201ENST00000583919 79 ntBASIC17.07■□□□□ 0.32
COL5A1P20908 AL513190.1-201ENST00000621254 727 ntBASIC17.07■□□□□ 0.32
COL5A1P20908 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL5A1P20908 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.07■□□□□ 0.32
COL5A1P20908 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL5A1P20908 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms