Protein–RNA interactions for Protein: O95749

GGPS1, Geranylgeranyl pyrophosphate synthase, humanhuman

Predictions only

Length 300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1O95749 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
GGPS1O95749 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.1■□□□□ 0.81
GGPS1O95749 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
GGPS1O95749 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
GGPS1O95749 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
GGPS1O95749 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.1■□□□□ 0.81
GGPS1O95749 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
GGPS1O95749 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
GGPS1O95749 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.09■□□□□ 0.81
GGPS1O95749 IL9RP2-201ENST00000423948 1312 ntBASIC20.09■□□□□ 0.81
GGPS1O95749 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.09■□□□□ 0.81
GGPS1O95749 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.09■□□□□ 0.81
GGPS1O95749 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 AC007967.3-201ENST00000434308 558 ntBASIC20.09■□□□□ 0.81
GGPS1O95749 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.09■□□□□ 0.81
GGPS1O95749 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.09■□□□□ 0.81
GGPS1O95749 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.09■□□□□ 0.81
GGPS1O95749 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.09■□□□□ 0.81
GGPS1O95749 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.09■□□□□ 0.81
GGPS1O95749 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.09■□□□□ 0.81
GGPS1O95749 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
GGPS1O95749 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.09■□□□□ 0.81
GGPS1O95749 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
GGPS1O95749 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 WIZP1-201ENST00000531444 2299 ntBASIC20.09■□□□□ 0.81
GGPS1O95749 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
GGPS1O95749 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 AC097374.2-201ENST00000618617 1306 ntBASIC20.08■□□□□ 0.81
GGPS1O95749 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.08■□□□□ 0.81
GGPS1O95749 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.08■□□□□ 0.81
GGPS1O95749 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
GGPS1O95749 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 FAM220CP-201ENST00000395253 831 ntBASIC20.08■□□□□ 0.81
GGPS1O95749 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.08■□□□□ 0.81
GGPS1O95749 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.08■□□□□ 0.81
GGPS1O95749 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
GGPS1O95749 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.08■□□□□ 0.81
GGPS1O95749 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.08■□□□□ 0.81
GGPS1O95749 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.08■□□□□ 0.81
GGPS1O95749 SART3-203ENST00000546611 1184 ntBASIC20.08■□□□□ 0.81
GGPS1O95749 AL049840.3-201ENST00000602669 611 ntBASIC20.08■□□□□ 0.81
GGPS1O95749 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.08■□□□□ 0.81
GGPS1O95749 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
GGPS1O95749 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.08■□□□□ 0.8
GGPS1O95749 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.08■□□□□ 0.8
GGPS1O95749 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
GGPS1O95749 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
GGPS1O95749 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.08■□□□□ 0.8
GGPS1O95749 KRT8P47-201ENST00000604727 1398 ntBASIC20.08■□□□□ 0.8
GGPS1O95749 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
GGPS1O95749 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.07■□□□□ 0.8
GGPS1O95749 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 HNRNPDP1-201ENST00000439535 754 ntBASIC20.07■□□□□ 0.8
GGPS1O95749 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.07■□□□□ 0.8
GGPS1O95749 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.07■□□□□ 0.8
GGPS1O95749 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.07■□□□□ 0.8
GGPS1O95749 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 MIR7706-201ENST00000613747 67 ntBASIC20.07■□□□□ 0.8
GGPS1O95749 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
GGPS1O95749 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
GGPS1O95749 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms