Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 PRORSD1P-202ENST00000563365 2154 ntBASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TMX2-CTNND1H3BSU7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AP002469.2-201ENST00000531724 424 ntBASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC008894.3-201ENST00000624324 3103 ntBASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
TMX2-CTNND1H3BSU7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC124067.4-201ENST00000519691 2379 ntBASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC079781.3-201ENST00000449110 356 ntBASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 MINOS1P3-201ENST00000457048 203 ntBASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.61■□□□□ 0.41
TMX2-CTNND1H3BSU7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AL022342.1-201ENST00000400363 863 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 SAPCD2P3-201ENST00000455031 850 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
TMX2-CTNND1H3BSU7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms