Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 Z69720.1-201ENST00000601483 472 ntBASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 AC099336.1-202ENST00000602961 463 ntBASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 IGHV3-47-201ENST00000425060 335 ntBASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 AL592071.1-201ENST00000611956 408 ntBASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 AC124864.1-201ENST00000623408 392 ntBASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 AC068587.9-201ENST00000641814 219 ntBASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC144BQ3MJ40 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 RN7SL606P-201ENST00000472779 293 ntBASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 LINC00896-202ENST00000609602 2128 ntBASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC144BQ3MJ40 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 KRT16P4-201ENST00000453883 522 ntBASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 GUSBP12-201ENST00000513727 720 ntBASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 AP002469.2-201ENST00000531724 424 ntBASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 AL353801.3-201ENST00000609898 542 ntBASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC144BQ3MJ40 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 AC099398.1-201ENST00000567919 2776 ntBASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC144BQ3MJ40 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms