Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC132938.6-201ENST00000623828 1655 ntBASIC17.81■□□□□ 0.44
CXCL12P48061 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.81■□□□□ 0.44
CXCL12P48061 IGHV3-65-201ENST00000523210 341 ntBASIC17.81■□□□□ 0.44
CXCL12P48061 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.81■□□□□ 0.44
CXCL12P48061 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 AC008667.4-201ENST00000607370 168 ntBASIC17.81■□□□□ 0.44
CXCL12P48061 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.81■□□□□ 0.44
CXCL12P48061 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CXCL12P48061 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 NCF1C-201ENST00000438382 1427 ntBASIC17.81■□□□□ 0.44
CXCL12P48061 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CXCL12P48061 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.8■□□□□ 0.44
CXCL12P48061 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.8■□□□□ 0.44
CXCL12P48061 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.8■□□□□ 0.44
CXCL12P48061 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 RPS15P9-201ENST00000494093 319 ntBASIC17.8■□□□□ 0.44
CXCL12P48061 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.8■□□□□ 0.44
CXCL12P48061 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.8■□□□□ 0.44
CXCL12P48061 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.8■□□□□ 0.44
CXCL12P48061 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.8■□□□□ 0.44
CXCL12P48061 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.8■□□□□ 0.44
CXCL12P48061 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CXCL12P48061 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 COX5BP2-201ENST00000392354 334 ntBASIC17.79■□□□□ 0.44
CXCL12P48061 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.79■□□□□ 0.44
CXCL12P48061 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 AC004790.2-201ENST00000623588 572 ntBASIC17.79■□□□□ 0.44
CXCL12P48061 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.79■□□□□ 0.44
CXCL12P48061 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CXCL12P48061 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CXCL12P48061 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.79■□□□□ 0.44
CXCL12P48061 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.79■□□□□ 0.44
CXCL12P48061 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CXCL12P48061 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
CXCL12P48061 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CXCL12P48061 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CXCL12P48061 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.78■□□□□ 0.44
CXCL12P48061 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.78■□□□□ 0.44
CXCL12P48061 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
CXCL12P48061 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CXCL12P48061 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.78■□□□□ 0.44
CXCL12P48061 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.78■□□□□ 0.44
CXCL12P48061 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms