Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.06■□□□□ 0.32
RORAP35398 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RORAP35398 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.06■□□□□ 0.32
RORAP35398 GMCL1P1-201ENST00000463439 1581 ntBASIC17.06■□□□□ 0.32
RORAP35398 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RORAP35398 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.05■□□□□ 0.32
RORAP35398 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.05■□□□□ 0.32
RORAP35398 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.05■□□□□ 0.32
RORAP35398 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.05■□□□□ 0.32
RORAP35398 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 AF238378.1-201ENST00000526806 358 ntBASIC17.05■□□□□ 0.32
RORAP35398 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.05■□□□□ 0.32
RORAP35398 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
RORAP35398 SLC25A6P4-201ENST00000586535 553 ntBASIC17.05■□□□□ 0.32
RORAP35398 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.05■□□□□ 0.32
RORAP35398 AL591684.3-201ENST00000605187 298 ntBASIC17.05■□□□□ 0.32
RORAP35398 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.05■□□□□ 0.32
RORAP35398 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RORAP35398 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RORAP35398 AC090164.3-201ENST00000610780 2143 ntBASIC17.05■□□□□ 0.32
RORAP35398 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.05■□□□□ 0.32
RORAP35398 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RORAP35398 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.04■□□□□ 0.32
RORAP35398 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
RORAP35398 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.04■□□□□ 0.32
RORAP35398 AL138831.2-201ENST00000606564 490 ntBASIC17.04■□□□□ 0.32
RORAP35398 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.04■□□□□ 0.32
RORAP35398 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RORAP35398 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RORAP35398 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.03■□□□□ 0.32
RORAP35398 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.03■□□□□ 0.32
RORAP35398 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
RORAP35398 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.03■□□□□ 0.32
RORAP35398 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RORAP35398 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RORAP35398 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms