Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKNO60260 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKNO60260 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKNO60260 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKNO60260 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKNO60260 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PRKNO60260 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PRKNO60260 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 AC100803.2-201ENST00000562459 1963 ntBASIC16.71■□□□□ 0.27
PRKNO60260 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.71■□□□□ 0.27
PRKNO60260 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.71■□□□□ 0.27
PRKNO60260 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.71■□□□□ 0.27
PRKNO60260 MIR3652-201ENST00000579335 131 ntBASIC16.71■□□□□ 0.27
PRKNO60260 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.71■□□□□ 0.27
PRKNO60260 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.71■□□□□ 0.27
PRKNO60260 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PRKNO60260 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
PRKNO60260 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKNO60260 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
PRKNO60260 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PRKNO60260 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.7■□□□□ 0.26
PRKNO60260 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
PRKNO60260 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.7■□□□□ 0.26
PRKNO60260 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.7■□□□□ 0.26
PRKNO60260 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKNO60260 AC009154.2-201ENST00000621177 724 ntBASIC16.7■□□□□ 0.26
PRKNO60260 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.7■□□□□ 0.26
PRKNO60260 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PRKNO60260 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms