Protein–RNA interactions for Protein: O43868

SLC28A2, Sodium/nucleoside cotransporter 2, humanhuman

Predictions only

Length 658 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A2O43868 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A2O43868 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A2O43868 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.34■□□□□ 0.37
SLC28A2O43868 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.34■□□□□ 0.37
SLC28A2O43868 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.34■□□□□ 0.37
SLC28A2O43868 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A2O43868 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A2O43868 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.34■□□□□ 0.37
SLC28A2O43868 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SLC28A2O43868 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.34■□□□□ 0.37
SLC28A2O43868 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SLC28A2O43868 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.33■□□□□ 0.37
SLC28A2O43868 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.33■□□□□ 0.37
SLC28A2O43868 AC008556.1-201ENST00000610908 2040 ntBASIC17.33■□□□□ 0.37
SLC28A2O43868 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
SLC28A2O43868 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
SLC28A2O43868 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.33■□□□□ 0.37
SLC28A2O43868 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SLC28A2O43868 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.33■□□□□ 0.36
SLC28A2O43868 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A2O43868 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A2O43868 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A2O43868 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.33■□□□□ 0.36
SLC28A2O43868 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SLC28A2O43868 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.33■□□□□ 0.36
SLC28A2O43868 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.33■□□□□ 0.36
SLC28A2O43868 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SLC28A2O43868 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SLC28A2O43868 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SLC28A2O43868 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SLC28A2O43868 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SLC28A2O43868 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SLC28A2O43868 AL109659.2-201ENST00000606809 1674 ntBASIC17.32■□□□□ 0.36
SLC28A2O43868 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SLC28A2O43868 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.32■□□□□ 0.36
SLC28A2O43868 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SLC28A2O43868 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 TSPY12P-201ENST00000421279 868 ntBASIC17.32■□□□□ 0.36
SLC28A2O43868 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A2O43868 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 KRT18P58-201ENST00000527480 1120 ntBASIC17.32■□□□□ 0.36
SLC28A2O43868 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.32■□□□□ 0.36
SLC28A2O43868 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.32■□□□□ 0.36
SLC28A2O43868 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.32■□□□□ 0.36
SLC28A2O43868 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SLC28A2O43868 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms