Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 AC104390.1-201ENST00000555663 520 ntBASIC17.27■□□□□ 0.36
VMP1Q96GC9 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 MYC-208ENST00000641036 567 ntBASIC17.27■□□□□ 0.36
VMP1Q96GC9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
VMP1Q96GC9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VMP1Q96GC9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 SPDYE15P-201ENST00000424157 909 ntBASIC17.26■□□□□ 0.35
VMP1Q96GC9 KRT18P38-201ENST00000449496 1282 ntBASIC17.26■□□□□ 0.35
VMP1Q96GC9 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 RASA4DP-201ENST00000460726 1199 ntBASIC17.26■□□□□ 0.35
VMP1Q96GC9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.26■□□□□ 0.35
VMP1Q96GC9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 LINC00896-202ENST00000609602 2128 ntBASIC17.26■□□□□ 0.35
VMP1Q96GC9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.26■□□□□ 0.35
VMP1Q96GC9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VMP1Q96GC9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 AC112907.2-201ENST00000448639 330 ntBASIC17.25■□□□□ 0.35
VMP1Q96GC9 AL671277.2-201ENST00000458060 996 ntBASIC17.25■□□□□ 0.35
VMP1Q96GC9 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 MIR3917-201ENST00000580971 93 ntBASIC17.25■□□□□ 0.35
VMP1Q96GC9 AC010240.3-201ENST00000607688 395 ntBASIC17.25■□□□□ 0.35
VMP1Q96GC9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VMP1Q96GC9 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VMP1Q96GC9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.24■□□□□ 0.35
VMP1Q96GC9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VMP1Q96GC9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms