Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC23.42■■□□□ 1.34
RTF1Q92541 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
RTF1Q92541 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
RTF1Q92541 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.42■■□□□ 1.34
RTF1Q92541 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.42■■□□□ 1.34
RTF1Q92541 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
RTF1Q92541 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
RTF1Q92541 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 MED16-201ENST00000269814 1199 ntTSL 5 BASIC23.41■■□□□ 1.34
RTF1Q92541 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC23.41■■□□□ 1.34
RTF1Q92541 IRF8-202ENST00000562492 946 ntTSL 3 BASIC23.41■■□□□ 1.34
RTF1Q92541 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.41■■□□□ 1.34
RTF1Q92541 AC008608.2-201ENST00000606089 416 ntBASIC23.41■■□□□ 1.34
RTF1Q92541 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.41■■□□□ 1.34
RTF1Q92541 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.41■■□□□ 1.34
RTF1Q92541 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
RTF1Q92541 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC23.41■■□□□ 1.34
RTF1Q92541 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
RTF1Q92541 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
RTF1Q92541 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.4■■□□□ 1.34
RTF1Q92541 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC23.4■■□□□ 1.34
RTF1Q92541 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 AC097374.2-201ENST00000618617 1306 ntBASIC23.4■■□□□ 1.34
RTF1Q92541 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.4■■□□□ 1.34
RTF1Q92541 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
RTF1Q92541 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.4■■□□□ 1.34
RTF1Q92541 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.4■■□□□ 1.34
RTF1Q92541 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC23.4■■□□□ 1.34
RTF1Q92541 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC23.4■■□□□ 1.34
RTF1Q92541 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC23.4■■□□□ 1.34
RTF1Q92541 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
RTF1Q92541 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
RTF1Q92541 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
RTF1Q92541 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
RTF1Q92541 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
RTF1Q92541 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
RTF1Q92541 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC23.39■■□□□ 1.34
RTF1Q92541 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.39■■□□□ 1.34
RTF1Q92541 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.39■■□□□ 1.34
RTF1Q92541 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.39■■□□□ 1.34
RTF1Q92541 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC23.39■■□□□ 1.34
RTF1Q92541 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
RTF1Q92541 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.39■■□□□ 1.33
RTF1Q92541 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.39■■□□□ 1.33
RTF1Q92541 AL662844.1-201ENST00000546340 181 ntBASIC23.39■■□□□ 1.33
RTF1Q92541 SLC25A6P4-201ENST00000586535 553 ntBASIC23.39■■□□□ 1.33
RTF1Q92541 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.39■■□□□ 1.33
RTF1Q92541 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC23.39■■□□□ 1.33
RTF1Q92541 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.39■■□□□ 1.33
RTF1Q92541 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
RTF1Q92541 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
RTF1Q92541 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms