Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC144BQ3MJ40 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC144BQ3MJ40 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.89■□□□□ 0.94
CCDC144BQ3MJ40 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 IGHGP-201ENST00000390555 1178 ntBASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC144BQ3MJ40 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
CCDC144BQ3MJ40 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 AC024563.2-201ENST00000603282 481 ntBASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC144BQ3MJ40 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.86■□□□□ 0.93
CCDC144BQ3MJ40 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms