Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX4Q06945 AP000347.1-202ENST00000435868 847 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 FAM197Y8-203ENST00000450145 560 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.18■□□□□ 0.66
SOX4Q06945 RNA5SP419-201ENST00000515908 135 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX4Q06945 MTDHP3-201ENST00000594186 672 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.18■□□□□ 0.66
SOX4Q06945 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SOX4Q06945 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 AP000997.3-201ENST00000623333 2250 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 HLA-A-201ENST00000376802 1334 ntBASIC19.18■□□□□ 0.66
SOX4Q06945 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.18■□□□□ 0.66
SOX4Q06945 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 AP005117.1-201ENST00000584346 1413 ntBASIC19.17■□□□□ 0.66
SOX4Q06945 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SOX4Q06945 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.17■□□□□ 0.66
SOX4Q06945 ABCD1P5-201ENST00000445663 754 ntBASIC19.17■□□□□ 0.66
SOX4Q06945 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SOX4Q06945 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.17■□□□□ 0.66
SOX4Q06945 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SOX4Q06945 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.17■□□□□ 0.66
SOX4Q06945 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.16■□□□□ 0.66
SOX4Q06945 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX4Q06945 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SOX4Q06945 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX4Q06945 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SOX4Q06945 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 FAM220CP-201ENST00000395253 831 ntBASIC19.16■□□□□ 0.66
SOX4Q06945 RBM17P3-201ENST00000417687 1192 ntBASIC19.16■□□□□ 0.66
SOX4Q06945 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.16■□□□□ 0.66
SOX4Q06945 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.16■□□□□ 0.66
SOX4Q06945 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX4Q06945 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.16■□□□□ 0.66
SOX4Q06945 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.16■□□□□ 0.66
SOX4Q06945 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SOX4Q06945 AC022898.2-201ENST00000616822 1312 ntBASIC19.16■□□□□ 0.66
SOX4Q06945 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SOX4Q06945 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SOX4Q06945 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX4Q06945 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.15■□□□□ 0.66
SOX4Q06945 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SOX4Q06945 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX4Q06945 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.15■□□□□ 0.66
SOX4Q06945 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX4Q06945 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.15■□□□□ 0.66
SOX4Q06945 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.15■□□□□ 0.66
SOX4Q06945 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.15■□□□□ 0.66
SOX4Q06945 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms