Protein–RNA interactions for Protein: P83916

CBX1, Chromobox protein homolog 1, humanhuman

Predictions only

Length 185 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1P83916 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CBX1P83916 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC18.85■□□□□ 0.61
CBX1P83916 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.85■□□□□ 0.61
CBX1P83916 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.85■□□□□ 0.61
CBX1P83916 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.84■□□□□ 0.61
CBX1P83916 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
CBX1P83916 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.84■□□□□ 0.61
CBX1P83916 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CBX1P83916 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.84■□□□□ 0.61
CBX1P83916 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.84■□□□□ 0.61
CBX1P83916 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.84■□□□□ 0.61
CBX1P83916 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.84■□□□□ 0.61
CBX1P83916 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.84■□□□□ 0.61
CBX1P83916 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CBX1P83916 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CBX1P83916 CYP21A1P-202ENST00000354927 1481 ntBASIC18.84■□□□□ 0.61
CBX1P83916 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.84■□□□□ 0.61
CBX1P83916 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CBX1P83916 AC112777.1-201ENST00000540175 1423 ntBASIC18.83■□□□□ 0.61
CBX1P83916 RBM17P2-201ENST00000616397 1405 ntBASIC18.83■□□□□ 0.61
CBX1P83916 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.83■□□□□ 0.61
CBX1P83916 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.83■□□□□ 0.61
CBX1P83916 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CBX1P83916 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CBX1P83916 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 MIR4767-201ENST00000582827 78 ntBASIC18.83■□□□□ 0.6
CBX1P83916 AC243732.1-201ENST00000612648 864 ntBASIC18.83■□□□□ 0.6
CBX1P83916 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CBX1P83916 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.83■□□□□ 0.6
CBX1P83916 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 AC092171.3-201ENST00000610122 2651 ntBASIC18.83■□□□□ 0.6
CBX1P83916 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 PKD1P5-201ENST00000532415 10291 ntBASIC18.83■□□□□ 0.6
CBX1P83916 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.83■□□□□ 0.6
CBX1P83916 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CBX1P83916 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC18.82■□□□□ 0.6
CBX1P83916 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.82■□□□□ 0.6
CBX1P83916 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CBX1P83916 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC18.82■□□□□ 0.6
CBX1P83916 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
CBX1P83916 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.82■□□□□ 0.6
CBX1P83916 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CBX1P83916 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CBX1P83916 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CBX1P83916 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms