Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.46■□□□□ 0.71
TNFSF9P41273 AL138831.2-201ENST00000606564 490 ntBASIC19.46■□□□□ 0.71
TNFSF9P41273 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.46■□□□□ 0.71
TNFSF9P41273 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.46■□□□□ 0.71
TNFSF9P41273 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TNFSF9P41273 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TNFSF9P41273 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TNFSF9P41273 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TNFSF9P41273 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
TNFSF9P41273 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 AC125634.1-201ENST00000438758 1403 ntBASIC19.45■□□□□ 0.7
TNFSF9P41273 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.45■□□□□ 0.7
TNFSF9P41273 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.45■□□□□ 0.7
TNFSF9P41273 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
TNFSF9P41273 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.45■□□□□ 0.7
TNFSF9P41273 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
TNFSF9P41273 UNC93B7-201ENST00000509439 705 ntBASIC19.45■□□□□ 0.7
TNFSF9P41273 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 KRT126P-201ENST00000549467 1181 ntBASIC19.45■□□□□ 0.7
TNFSF9P41273 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.45■□□□□ 0.7
TNFSF9P41273 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.45■□□□□ 0.7
TNFSF9P41273 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 AC138028.4-201ENST00000564984 1845 ntBASIC19.45■□□□□ 0.7
TNFSF9P41273 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TNFSF9P41273 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFSF9P41273 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
TNFSF9P41273 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFSF9P41273 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.44■□□□□ 0.7
TNFSF9P41273 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.44■□□□□ 0.7
TNFSF9P41273 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TNFSF9P41273 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.44■□□□□ 0.7
TNFSF9P41273 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.44■□□□□ 0.7
TNFSF9P41273 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.44■□□□□ 0.7
TNFSF9P41273 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.44■□□□□ 0.7
TNFSF9P41273 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TNFSF9P41273 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
TNFSF9P41273 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
TNFSF9P41273 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TNFSF9P41273 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TNFSF9P41273 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.43■□□□□ 0.7
TNFSF9P41273 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.43■□□□□ 0.7
TNFSF9P41273 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TNFSF9P41273 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 NUS1P2-201ENST00000417358 873 ntBASIC19.43■□□□□ 0.7
TNFSF9P41273 TSPY19P-201ENST00000418461 509 ntBASIC19.43■□□□□ 0.7
TNFSF9P41273 TSPY18P-201ENST00000441642 509 ntBASIC19.43■□□□□ 0.7
TNFSF9P41273 AC096582.2-201ENST00000510860 516 ntBASIC19.43■□□□□ 0.7
TNFSF9P41273 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.43■□□□□ 0.7
TNFSF9P41273 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.43■□□□□ 0.7
TNFSF9P41273 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TNFSF9P41273 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.43■□□□□ 0.7
TNFSF9P41273 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.43■□□□□ 0.7
TNFSF9P41273 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.43■□□□□ 0.7
TNFSF9P41273 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TNFSF9P41273 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms