Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.95■□□□□ 0.62
BDNFP23560 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.95■□□□□ 0.62
BDNFP23560 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.95■□□□□ 0.62
BDNFP23560 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.95■□□□□ 0.62
BDNFP23560 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.95■□□□□ 0.62
BDNFP23560 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
BDNFP23560 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 TP73-AS1-210ENST00000637775 1455 ntBASIC18.95■□□□□ 0.62
BDNFP23560 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
BDNFP23560 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 AC004870.1-201ENST00000315132 882 ntBASIC18.94■□□□□ 0.62
BDNFP23560 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 RCN1P2-201ENST00000398357 915 ntBASIC18.94■□□□□ 0.62
BDNFP23560 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.94■□□□□ 0.62
BDNFP23560 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.94■□□□□ 0.62
BDNFP23560 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.94■□□□□ 0.62
BDNFP23560 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.94■□□□□ 0.62
BDNFP23560 MIR5100-201ENST00000579544 119 ntBASIC18.94■□□□□ 0.62
BDNFP23560 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.94■□□□□ 0.62
BDNFP23560 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
BDNFP23560 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.94■□□□□ 0.62
BDNFP23560 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BDNFP23560 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.93■□□□□ 0.62
BDNFP23560 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.93■□□□□ 0.62
BDNFP23560 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
BDNFP23560 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.93■□□□□ 0.62
BDNFP23560 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
BDNFP23560 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 DUTP2-201ENST00000519164 463 ntBASIC18.93■□□□□ 0.62
BDNFP23560 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 AL591684.3-201ENST00000605187 298 ntBASIC18.93■□□□□ 0.62
BDNFP23560 AC114341.1-201ENST00000618070 349 ntBASIC18.93■□□□□ 0.62
BDNFP23560 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.93■□□□□ 0.62
BDNFP23560 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BDNFP23560 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
BDNFP23560 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BDNFP23560 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
BDNFP23560 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
BDNFP23560 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms