Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.44■□□□□ 0.7
RNF40O75150 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
RNF40O75150 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.44■□□□□ 0.7
RNF40O75150 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.44■□□□□ 0.7
RNF40O75150 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 AL136038.3-201ENST00000561909 1096 ntBASIC19.44■□□□□ 0.7
RNF40O75150 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 AC083849.1-201ENST00000615227 514 ntBASIC19.44■□□□□ 0.7
RNF40O75150 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.44■□□□□ 0.7
RNF40O75150 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RNF40O75150 AC135776.1-201ENST00000319817 2481 ntBASIC19.44■□□□□ 0.7
RNF40O75150 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF40O75150 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF40O75150 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.43■□□□□ 0.7
RNF40O75150 GCSHP2-201ENST00000560971 527 ntBASIC19.43■□□□□ 0.7
RNF40O75150 NEK4P2-201ENST00000580004 1012 ntBASIC19.43■□□□□ 0.7
RNF40O75150 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.43■□□□□ 0.7
RNF40O75150 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
RNF40O75150 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF40O75150 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF40O75150 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF40O75150 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.43■□□□□ 0.7
RNF40O75150 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RNF40O75150 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.42■□□□□ 0.7
RNF40O75150 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF40O75150 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.42■□□□□ 0.7
RNF40O75150 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.42■□□□□ 0.7
RNF40O75150 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
RNF40O75150 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.42■□□□□ 0.7
RNF40O75150 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RNF40O75150 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RNF40O75150 TPM4P1-201ENST00000436100 807 ntBASIC19.42■□□□□ 0.7
RNF40O75150 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF40O75150 ZNF444P1-201ENST00000559497 298 ntBASIC19.42■□□□□ 0.7
RNF40O75150 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF40O75150 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.42■□□□□ 0.7
RNF40O75150 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.42■□□□□ 0.7
RNF40O75150 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF40O75150 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
RNF40O75150 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms