Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.75■□□□□ 0.27
PRKNO60260 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.75■□□□□ 0.27
PRKNO60260 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.75■□□□□ 0.27
PRKNO60260 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.75■□□□□ 0.27
PRKNO60260 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
PRKNO60260 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 AL354751.1-201ENST00000412768 1863 ntBASIC16.75■□□□□ 0.27
PRKNO60260 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.75■□□□□ 0.27
PRKNO60260 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.75■□□□□ 0.27
PRKNO60260 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKNO60260 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
PRKNO60260 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 DUSP5P1-201ENST00000441325 1139 ntBASIC16.74■□□□□ 0.27
PRKNO60260 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.74■□□□□ 0.27
PRKNO60260 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.74■□□□□ 0.27
PRKNO60260 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.74■□□□□ 0.27
PRKNO60260 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.74■□□□□ 0.27
PRKNO60260 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.74■□□□□ 0.27
PRKNO60260 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 AL390961.4-201ENST00000623958 2535 ntBASIC16.74■□□□□ 0.27
PRKNO60260 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 AC233702.3-201ENST00000578656 1387 ntBASIC16.74■□□□□ 0.27
PRKNO60260 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 ABALON-201ENST00000629058 1903 ntBASIC16.74■□□□□ 0.27
PRKNO60260 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKNO60260 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKNO60260 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.74■□□□□ 0.27
PRKNO60260 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.73■□□□□ 0.27
PRKNO60260 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PRKNO60260 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.73■□□□□ 0.27
PRKNO60260 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.73■□□□□ 0.27
PRKNO60260 AC068472.1-201ENST00000474589 881 ntBASIC16.73■□□□□ 0.27
PRKNO60260 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.73■□□□□ 0.27
PRKNO60260 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.73■□□□□ 0.27
PRKNO60260 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PRKNO60260 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 AC093010.1-201ENST00000473625 1624 ntBASIC16.73■□□□□ 0.27
PRKNO60260 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PRKNO60260 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PRKNO60260 AL133373.2-201ENST00000623187 2828 ntBASIC16.73■□□□□ 0.27
PRKNO60260 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.73■□□□□ 0.27
PRKNO60260 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKNO60260 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKNO60260 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms