Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 NUS1P1-201ENST00000446295 882 ntBASIC19.25■□□□□ 0.67
SIX4Q9UIU6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.25■□□□□ 0.67
SIX4Q9UIU6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 AC099336.1-202ENST00000602961 463 ntBASIC19.24■□□□□ 0.67
SIX4Q9UIU6 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SIX4Q9UIU6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 FOSL1P1-201ENST00000511041 816 ntBASIC19.23■□□□□ 0.67
SIX4Q9UIU6 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 KRT18P55-202ENST00000578578 1546 ntBASIC19.23■□□□□ 0.67
SIX4Q9UIU6 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SIX4Q9UIU6 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.22■□□□□ 0.67
SIX4Q9UIU6 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 MINOS1P3-201ENST00000457048 203 ntBASIC19.22■□□□□ 0.67
SIX4Q9UIU6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 PRELID1P1-202ENST00000567272 903 ntBASIC19.22■□□□□ 0.67
SIX4Q9UIU6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 AC138894.3-201ENST00000603787 634 ntBASIC19.22■□□□□ 0.67
SIX4Q9UIU6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.22■□□□□ 0.67
SIX4Q9UIU6 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms