Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 AL031008.1-201ENST00000619963 541 ntBASIC20.91■□□□□ 0.94
TRERF1Q96PN7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRERF1Q96PN7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 KRT8P10-201ENST00000450021 1447 ntBASIC20.9■□□□□ 0.94
TRERF1Q96PN7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRERF1Q96PN7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
TRERF1Q96PN7 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 AC079781.3-201ENST00000449110 356 ntBASIC20.89■□□□□ 0.93
TRERF1Q96PN7 MINOS1P3-201ENST00000457048 203 ntBASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 AC104692.2-201ENST00000603054 253 ntBASIC20.89■□□□□ 0.93
TRERF1Q96PN7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 AL353801.3-201ENST00000609898 542 ntBASIC20.89■□□□□ 0.93
TRERF1Q96PN7 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRERF1Q96PN7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms