Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 ARMC10P1-201ENST00000313754 855 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 STARP1-201ENST00000397973 869 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 AC087388.1-201ENST00000571370 1112 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 MTMR9LP-203ENST00000426597 1545 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 TNRC18P3-201ENST00000441896 2691 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VMP1Q96GC9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 ESPNP-201ENST00000270691 2015 ntBASIC17.3■□□□□ 0.36
VMP1Q96GC9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.3■□□□□ 0.36
VMP1Q96GC9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.29■□□□□ 0.36
VMP1Q96GC9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 AL357033.4-201ENST00000617703 1807 ntBASIC17.29■□□□□ 0.36
VMP1Q96GC9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 SEC1P-202ENST00000473944 940 ntBASIC17.29■□□□□ 0.36
VMP1Q96GC9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VMP1Q96GC9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.29■□□□□ 0.36
VMP1Q96GC9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VMP1Q96GC9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.28■□□□□ 0.36
VMP1Q96GC9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VMP1Q96GC9 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
VMP1Q96GC9 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms