Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ZFAND2B-210ENST00000425849 484 ntTSL 316.9■□□□□ 0.32e-7■□□□□ 9.9
DDX55Q8NHQ9 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.652e-7■□□□□ 9.9
DDX55Q8NHQ9 SLC2A4RG-207ENST00000493772 1328 ntTSL 1 (best)25.04■■□□□ 1.62e-7■□□□□ 9.9
DDX55Q8NHQ9 HNRNPL-205ENST00000595804 588 ntTSL 210.37□□□□□ -0.752e-53■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-208ENST00000588667 1619 ntTSL 1 (best)24.17■■□□□ 1.461e-19■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.381e-19■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-204ENST00000586417 1752 ntTSL 223.55■■□□□ 1.361e-19■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-211ENST00000589753 931 ntTSL 1 (best)17.94■□□□□ 0.461e-19■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-202ENST00000585437 377 ntTSL 510.57□□□□□ -0.721e-19■□□□□ 9.9
DDX55Q8NHQ9 ATG4D-210ENST00000588972 632 ntTSL 59.13□□□□□ -0.951e-19■□□□□ 9.9
DDX55Q8NHQ9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC32.14■■■□□ 2.742e-7■□□□□ 9.9
DDX55Q8NHQ9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.631e-7■□□□□ 9.9
DDX55Q8NHQ9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.941e-7■□□□□ 9.9
DDX55Q8NHQ9 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.12■□□□□ 0.331e-7■□□□□ 9.9
DDX55Q8NHQ9 SERPINE1-201ENST00000223095 3190 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.531e-40■□□□□ 9.9
DDX55Q8NHQ9 TGFBI-213ENST00000514554 1691 ntTSL 517.74■□□□□ 0.433e-7■□□□□ 9.9
DDX55Q8NHQ9 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC15.84■□□□□ 0.133e-7■□□□□ 9.9
DDX55Q8NHQ9 TGFBI-201ENST00000442011 2804 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.323e-7■□□□□ 9.9
DDX55Q8NHQ9 TGFBI-206ENST00000507018 2469 ntTSL 512.7□□□□□ -0.383e-7■□□□□ 9.9
DDX55Q8NHQ9 TGFBI-205ENST00000506699 3159 ntTSL 212.08□□□□□ -0.483e-7■□□□□ 9.9
DDX55Q8NHQ9 CPNE1-228ENST00000498814 550 ntTSL 318.69■□□□□ 0.582e-14■□□□□ 9.9
DDX55Q8NHQ9 CPNE1-209ENST00000415920 731 ntTSL 516.48■□□□□ 0.232e-14■□□□□ 9.9
DDX55Q8NHQ9 CPNE1-221ENST00000462352 625 ntTSL 214.09□□□□□ -0.152e-14■□□□□ 9.9
DDX55Q8NHQ9 CPNE1-222ENST00000473373 821 ntTSL 214.04□□□□□ -0.162e-14■□□□□ 9.9
DDX55Q8NHQ9 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.122e-69■□□□□ 9.9
DDX55Q8NHQ9 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.572e-69■□□□□ 9.9
DDX55Q8NHQ9 RPL36-204ENST00000579446 452 ntTSL 2 BASIC13.66□□□□□ -0.222e-69■□□□□ 9.9
DDX55Q8NHQ9 RPL36-205ENST00000579649 449 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.552e-69■□□□□ 9.9
DDX55Q8NHQ9 STRN4-211ENST00000595357 1602 ntTSL 216.91■□□□□ 0.33e-6■□□□□ 9.9
DDX55Q8NHQ9 STRN4-219ENST00000600615 788 ntTSL 214.36□□□□□ -0.113e-6■□□□□ 9.9
DDX55Q8NHQ9 B2M-202ENST00000544417 933 ntTSL 5 BASIC14.21□□□□□ -0.134e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-212ENST00000561424 604 ntTSL 311.71□□□□□ -0.534e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.674e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-213ENST00000623550 2329 nt7.8□□□□□ -1.164e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-201ENST00000349264 732 ntTSL 37.17□□□□□ -1.264e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-205ENST00000559220 580 ntTSL 56.72□□□□□ -1.334e-8■□□□□ 9.9
DDX55Q8NHQ9 B2M-211ENST00000561139 717 ntTSL 36.19□□□□□ -1.424e-8■□□□□ 9.9
DDX55Q8NHQ9 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.745e-6■□□□□ 9.9
DDX55Q8NHQ9 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-16■□□□□ 9.9
DDX55Q8NHQ9 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-16■□□□□ 9.9
DDX55Q8NHQ9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.825e-14■□□□□ 9.9
DDX55Q8NHQ9 ELP5-211ENST00000573699 864 ntTSL 324.65■■□□□ 1.543e-6■□□□□ 9.9
DDX55Q8NHQ9 MAZ-207ENST00000563012 646 ntTSL 324.59■■□□□ 1.536e-45■□□□□ 9.9
DDX55Q8NHQ9 ELP5-213ENST00000574841 510 ntTSL 224.2■■□□□ 1.463e-6■□□□□ 9.9
DDX55Q8NHQ9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.461e-9■□□□□ 9.9
DDX55Q8NHQ9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.561e-9■□□□□ 9.9
DDX55Q8NHQ9 ELP5-209ENST00000573513 827 ntTSL 517.81■□□□□ 0.443e-6■□□□□ 9.9
DDX55Q8NHQ9 ELP5-206ENST00000570500 473 ntTSL 217.81■□□□□ 0.443e-6■□□□□ 9.9
DDX55Q8NHQ9 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.95■□□□□ 0.33e-6■□□□□ 9.9
DDX55Q8NHQ9 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.23■□□□□ 0.191e-9■□□□□ 9.9
DDX55Q8NHQ9 ELP5-210ENST00000573657 687 ntTSL 1 (best) BASIC15.14■□□□□ 0.013e-6■□□□□ 9.9
DDX55Q8NHQ9 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.42□□□□□ -0.11e-9■□□□□ 9.9
DDX55Q8NHQ9 MAMDC4-205ENST00000485732 4112 ntTSL 1 (best)14.84□□□□□ -0.034e-6■□□□□ 9.8
DDX55Q8NHQ9 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.18■■■□□ 2.741e-15■□□□□ 9.8
DDX55Q8NHQ9 APOM-201ENST00000375916 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.531e-15■□□□□ 9.8
DDX55Q8NHQ9 APOM-203ENST00000375920 709 ntTSL 1 (best) BASIC11.76□□□□□ -0.531e-15■□□□□ 9.8
DDX55Q8NHQ9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.98■■■□□ 2.878e-7■□□□□ 9.8
DDX55Q8NHQ9 SIGMAR1-204ENST00000461426 939 ntTSL 1 (best)32.2■■■□□ 2.758e-7■□□□□ 9.8
DDX55Q8NHQ9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.08■■■□□ 2.258e-7■□□□□ 9.8
DDX55Q8NHQ9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.958e-7■□□□□ 9.8
DDX55Q8NHQ9 SIGMAR1-202ENST00000353468 1582 ntTSL 1 (best)23.44■■□□□ 1.348e-7■□□□□ 9.8
DDX55Q8NHQ9 AFP-204ENST00000508838 728 ntTSL 27.11□□□□□ -1.277e-50■□□□□ 9.8
DDX55Q8NHQ9 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.327e-50■□□□□ 9.8
DDX55Q8NHQ9 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.84□□□□□ -1.327e-50■□□□□ 9.8
DDX55Q8NHQ9 AFP-203ENST00000506820 476 ntTSL 24.39□□□□□ -1.717e-50■□□□□ 9.8
DDX55Q8NHQ9 ATP1A1-205ENST00000440951 579 ntTSL 59.3□□□□□ -0.924e-27■□□□□ 9.8
DDX55Q8NHQ9 PKMYT1-202ENST00000382240 1991 ntTSL 222.27■■□□□ 1.166e-11■□□□□ 9.8
DDX55Q8NHQ9 PKMYT1-220ENST00000576268 1091 ntTSL 321.48■■□□□ 1.036e-11■□□□□ 9.8
DDX55Q8NHQ9 PKMYT1-218ENST00000575632 979 ntTSL 221.15■□□□□ 0.986e-11■□□□□ 9.8
DDX55Q8NHQ9 PKMYT1-214ENST00000574415 1006 ntTSL 520.75■□□□□ 0.916e-11■□□□□ 9.8
DDX55Q8NHQ9 PKMYT1-207ENST00000572059 880 ntTSL 520.31■□□□□ 0.846e-11■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-210ENST00000447144 1664 ntTSL 226.97■■□□□ 1.916e-8■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.846e-8■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.596e-8■□□□□ 9.8
DDX55Q8NHQ9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.253e-6■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.136e-8■□□□□ 9.8
DDX55Q8NHQ9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.03■■□□□ 1.123e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.12■□□□□ 0.973e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.923e-6■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.486e-8■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-204ENST00000414996 1746 ntTSL 1 (best)16.74■□□□□ 0.276e-8■□□□□ 9.8
DDX55Q8NHQ9 USP39-220ENST00000613444 2161 ntTSL 2 BASIC16.44■□□□□ 0.223e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.17■□□□□ 0.183e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-212ENST00000465514 660 ntTSL 312.48□□□□□ -0.413e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-210ENST00000459775 2148 ntTSL 211.96□□□□□ -0.493e-6■□□□□ 9.8
DDX55Q8NHQ9 MTMR14-213ENST00000606184 2966 nt11.18□□□□□ -0.626e-8■□□□□ 9.8
DDX55Q8NHQ9 FUT11-204ENST00000489264 1635 ntTSL 210.49□□□□□ -0.733e-6■□□□□ 9.8
DDX55Q8NHQ9 USP39-216ENST00000490193 1028 ntTSL 510.43□□□□□ -0.743e-6■□□□□ 9.8
DDX55Q8NHQ9 ARL6IP1-207ENST00000567969 581 ntTSL 223.09■■□□□ 1.292e-20■□□□□ 9.8
DDX55Q8NHQ9 ARL6IP1-206ENST00000566391 806 ntTSL 222.82■■□□□ 1.242e-20■□□□□ 9.8
DDX55Q8NHQ9 ARL6IP1-203ENST00000562234 391 ntTSL 521.16■□□□□ 0.982e-20■□□□□ 9.8
DDX55Q8NHQ9 ARL6IP1-208ENST00000569976 778 ntTSL 218.12■□□□□ 0.492e-20■□□□□ 9.8
DDX55Q8NHQ9 RNF220-209ENST00000474064 2734 ntTSL 223.07■■□□□ 1.286e-8■□□□□ 9.8
DDX55Q8NHQ9 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.136e-8■□□□□ 9.8
DDX55Q8NHQ9 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.136e-8■□□□□ 9.8
DDX55Q8NHQ9 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.266e-8■□□□□ 9.8
DDX55Q8NHQ9 SEMA4G-211ENST00000521006 4656 ntTSL 1 (best)14.18□□□□□ -0.141e-6■□□□□ 9.8
DDX55Q8NHQ9 SEMA4G-201ENST00000210633 4094 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.681e-6■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-202ENST00000462646 335 ntTSL 323.53■■□□□ 1.362e-11■□□□□ 9.8
DDX55Q8NHQ9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.292e-11■□□□□ 9.8
Retrieved 100 of 15,504 protein–RNA pairs in 172.9 ms