Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 KRT18P48-201ENST00000434763 852 ntBASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AP003733.1-201ENST00000491725 852 ntBASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AC005332.3-201ENST00000589904 676 ntBASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AC026471.1-201ENST00000564629 3026 ntBASIC21.76■■□□□ 1.07
VPS53Q5VIR6 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 LINC00167-201ENST00000530583 1419 ntBASIC21.75■■□□□ 1.07
VPS53Q5VIR6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 IGHGP-201ENST00000390555 1178 ntBASIC21.75■■□□□ 1.07
VPS53Q5VIR6 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 AC004263.2-201ENST00000617183 678 ntBASIC21.75■■□□□ 1.07
VPS53Q5VIR6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 Z83836.1-201ENST00000624605 1642 ntBASIC21.75■■□□□ 1.07
VPS53Q5VIR6 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS53Q5VIR6 LINC00602-201ENST00000629776 2065 ntBASIC21.75■■□□□ 1.07
VPS53Q5VIR6 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 SLC25A6P5-201ENST00000435663 894 ntBASIC21.74■■□□□ 1.07
VPS53Q5VIR6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 AL390719.2-201ENST00000606993 987 ntBASIC21.74■■□□□ 1.07
VPS53Q5VIR6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 KRT89P-201ENST00000620027 1478 ntBASIC21.74■■□□□ 1.07
VPS53Q5VIR6 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.74■■□□□ 1.07
VPS53Q5VIR6 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
VPS53Q5VIR6 AC067852.2-201ENST00000590513 2313 ntBASIC21.73■■□□□ 1.07
VPS53Q5VIR6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms