Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ALG1L5P-201ENST00000482043 771 ntBASIC21.93■■□□□ 1.1
COL4A1P02462 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.93■■□□□ 1.1
COL4A1P02462 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC21.93■■□□□ 1.1
COL4A1P02462 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.93■■□□□ 1.1
COL4A1P02462 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.93■■□□□ 1.1
COL4A1P02462 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A1P02462 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.93■■□□□ 1.1
COL4A1P02462 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A1P02462 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A1P02462 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL4A1P02462 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A1P02462 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 AC005104.2-201ENST00000427818 678 ntBASIC21.92■■□□□ 1.1
COL4A1P02462 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.92■■□□□ 1.1
COL4A1P02462 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC21.92■■□□□ 1.1
COL4A1P02462 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
COL4A1P02462 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 AC093677.2-201ENST00000600169 1863 ntBASIC21.92■■□□□ 1.1
COL4A1P02462 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
COL4A1P02462 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.92■■□□□ 1.1
COL4A1P02462 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL4A1P02462 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A1P02462 WIZP1-201ENST00000531444 2299 ntBASIC21.91■■□□□ 1.1
COL4A1P02462 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COL4A1P02462 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A1P02462 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL4A1P02462 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC21.91■■□□□ 1.1
COL4A1P02462 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.91■■□□□ 1.1
COL4A1P02462 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.91■■□□□ 1.1
COL4A1P02462 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 AP000974.1-201ENST00000623909 2387 ntBASIC21.9■■□□□ 1.1
COL4A1P02462 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC21.9■■□□□ 1.1
COL4A1P02462 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC21.9■■□□□ 1.1
COL4A1P02462 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 UPF3AP3-201ENST00000420996 769 ntBASIC21.9■■□□□ 1.1
COL4A1P02462 KRT18P2-201ENST00000447938 1258 ntBASIC21.9■■□□□ 1.1
COL4A1P02462 KRT18P3-201ENST00000451602 1288 ntBASIC21.9■■□□□ 1.1
COL4A1P02462 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.9■■□□□ 1.1
COL4A1P02462 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 AC093503.3-201ENST00000624917 2352 ntBASIC21.9■■□□□ 1.1
COL4A1P02462 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
COL4A1P02462 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL4A1P02462 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A1P02462 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A1P02462 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A1P02462 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
COL4A1P02462 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A1P02462 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.89■■□□□ 1.1
COL4A1P02462 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL4A1P02462 CRCP-205ENST00000431089 942 ntTSL 2 BASIC21.89■■□□□ 1.1
COL4A1P02462 AL591424.1-201ENST00000442569 1213 ntBASIC21.89■■□□□ 1.1
COL4A1P02462 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.89■■□□□ 1.1
COL4A1P02462 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.89■■□□□ 1.1
COL4A1P02462 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.89■■□□□ 1.1
COL4A1P02462 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.89■■□□□ 1.1
COL4A1P02462 AC073592.5-201ENST00000624854 528 ntBASIC21.89■■□□□ 1.1
COL4A1P02462 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.89■■□□□ 1.1
COL4A1P02462 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.89■■□□□ 1.1
COL4A1P02462 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.89■■□□□ 1.09
COL4A1P02462 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A1P02462 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
COL4A1P02462 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.89■■□□□ 1.09
COL4A1P02462 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms