Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.48■□□□□ 0.71
RNF40O75150 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.48■□□□□ 0.71
RNF40O75150 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.48■□□□□ 0.71
RNF40O75150 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.48■□□□□ 0.71
RNF40O75150 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
RNF40O75150 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
RNF40O75150 AL645608.8-201ENST00000606034 2086 ntBASIC19.48■□□□□ 0.71
RNF40O75150 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.48■□□□□ 0.71
RNF40O75150 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
RNF40O75150 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RNF40O75150 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.48■□□□□ 0.71
RNF40O75150 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.48■□□□□ 0.71
RNF40O75150 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
RNF40O75150 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
RNF40O75150 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF40O75150 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
RNF40O75150 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF40O75150 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
RNF40O75150 HCG4P8-203ENST00000443049 980 ntBASIC19.47■□□□□ 0.71
RNF40O75150 VENTXP5-201ENST00000523979 775 ntBASIC19.47■□□□□ 0.71
RNF40O75150 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF40O75150 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.47■□□□□ 0.71
RNF40O75150 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.47■□□□□ 0.71
RNF40O75150 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.47■□□□□ 0.71
RNF40O75150 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
RNF40O75150 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.46■□□□□ 0.71
RNF40O75150 DUSP5P1-201ENST00000441325 1139 ntBASIC19.46■□□□□ 0.71
RNF40O75150 AC112907.2-201ENST00000448639 330 ntBASIC19.46■□□□□ 0.71
RNF40O75150 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.46■□□□□ 0.71
RNF40O75150 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 AC069148.1-201ENST00000608741 768 ntBASIC19.46■□□□□ 0.71
RNF40O75150 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.46■□□□□ 0.71
RNF40O75150 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.46■□□□□ 0.71
RNF40O75150 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.46■□□□□ 0.71
RNF40O75150 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RNF40O75150 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RNF40O75150 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RNF40O75150 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
RNF40O75150 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.45■□□□□ 0.7
RNF40O75150 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF40O75150 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF40O75150 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF40O75150 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
RNF40O75150 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF40O75150 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
RNF40O75150 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RNF40O75150 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.45■□□□□ 0.7
RNF40O75150 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.45■□□□□ 0.7
RNF40O75150 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms