Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC23.23■■□□□ 1.31
SHANK3Q9BYB0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SHANK3Q9BYB0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SHANK3Q9BYB0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AC010654.1-201ENST00000615722 808 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AL805961.1-202ENST00000641562 540 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 SIRPAP1-201ENST00000448467 1770 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 ADH5P3-201ENST00000433842 1137 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 MIR4751-201ENST00000578027 74 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 AC008667.4-201ENST00000607370 168 ntBASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHANK3Q9BYB0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AC116562.4-201ENST00000641316 2276 ntBASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AL596442.2-201ENST00000610240 980 ntBASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AL589182.2-201ENST00000619332 1049 ntBASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AC005593.1-201ENST00000624894 515 ntBASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.21■■□□□ 1.31
SHANK3Q9BYB0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.31
SHANK3Q9BYB0 FUT8-AS1-201ENST00000621019 1521 ntBASIC23.2■■□□□ 1.31
SHANK3Q9BYB0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC23.2■■□□□ 1.31
SHANK3Q9BYB0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 CRYGEP-201ENST00000412192 528 ntBASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SHANK3Q9BYB0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 AC126763.1-201ENST00000552015 2118 ntBASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 GPR89P-201ENST00000407924 1495 ntBASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 PHGDH-209ENST00000641074 1780 ntBASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC23.19■■□□□ 1.3
SHANK3Q9BYB0 AL031598.1-201ENST00000561511 1773 ntBASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms