Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 AC093010.1-201ENST00000473625 1624 ntBASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 EDA-201ENST00000338901 1233 ntBASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 AC097381.1-201ENST00000429019 1296 ntBASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.42□□□□□ -0.1
CLRN3Q8NCR9 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 BX842568.3-201ENST00000418104 571 ntBASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AC024257.2-201ENST00000549699 147 ntBASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AL139246.5-201ENST00000606645 996 ntBASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 CICP4-201ENST00000447359 2812 ntBASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 AC126177.1-201ENST00000547829 2218 ntBASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLRN3Q8NCR9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 AC018553.1-201ENST00000616682 1458 ntBASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 AC105265.2-201ENST00000467189 838 ntBASIC14.4□□□□□ -0.1
CLRN3Q8NCR9 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms