Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 Z83851.2-201ENST00000609564 659 ntBASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 MTDHP4-201ENST00000600287 670 ntBASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.63■□□□□ 0.57
NPAS3Q8IXF0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AC005104.2-201ENST00000427818 678 ntBASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AL591424.1-201ENST00000442569 1213 ntBASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AP000867.4-201ENST00000641616 219 ntBASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AC107918.4-202ENST00000641623 219 ntBASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NPAS3Q8IXF0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 AC098818.2-201ENST00000564925 2320 ntBASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 AC105339.3-201ENST00000560043 636 ntBASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.61■□□□□ 0.57
NPAS3Q8IXF0 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms