Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
MSX2P35548 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.27■□□□□ 0.35
MSX2P35548 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.27■□□□□ 0.35
MSX2P35548 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX2P35548 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX2P35548 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.27■□□□□ 0.35
MSX2P35548 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX2P35548 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
MSX2P35548 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MSX2P35548 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
MSX2P35548 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.26■□□□□ 0.35
MSX2P35548 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.26■□□□□ 0.35
MSX2P35548 AC233263.1-201ENST00000578059 224 ntBASIC17.26■□□□□ 0.35
MSX2P35548 AC008403.3-201ENST00000598924 454 ntBASIC17.26■□□□□ 0.35
MSX2P35548 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.26■□□□□ 0.35
MSX2P35548 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
MSX2P35548 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.26■□□□□ 0.35
MSX2P35548 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
MSX2P35548 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX2P35548 AC008741.2-201ENST00000612792 3115 ntBASIC17.25■□□□□ 0.35
MSX2P35548 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.25■□□□□ 0.35
MSX2P35548 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
MSX2P35548 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 AC046158.3-201ENST00000624947 2558 ntBASIC17.25■□□□□ 0.35
MSX2P35548 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 AP000593.1-201ENST00000393668 712 ntBASIC17.25■□□□□ 0.35
MSX2P35548 AC008040.2-201ENST00000461049 708 ntBASIC17.25■□□□□ 0.35
MSX2P35548 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 AL023875.1-201ENST00000640777 796 ntBASIC17.25■□□□□ 0.35
MSX2P35548 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX2P35548 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSX2P35548 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MSX2P35548 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.24■□□□□ 0.35
MSX2P35548 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MSX2P35548 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.24■□□□□ 0.35
MSX2P35548 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms