Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 IGHGP-201ENST00000390555 1178 ntBASIC20.92■□□□□ 0.94
CTDNEP1O95476 FAM8A6P-201ENST00000407496 1135 ntBASIC20.92■□□□□ 0.94
CTDNEP1O95476 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 KRT18P48-201ENST00000434763 852 ntBASIC20.92■□□□□ 0.94
CTDNEP1O95476 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 RNF126P1-202ENST00000569893 925 ntBASIC20.92■□□□□ 0.94
CTDNEP1O95476 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.92■□□□□ 0.94
CTDNEP1O95476 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CTDNEP1O95476 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 KRT18P65-201ENST00000439811 1286 ntBASIC20.91■□□□□ 0.94
CTDNEP1O95476 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 DUX4L26-201ENST00000489078 1255 ntBASIC20.91■□□□□ 0.94
CTDNEP1O95476 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.91■□□□□ 0.94
CTDNEP1O95476 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CTDNEP1O95476 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 AL355312.1-201ENST00000407115 2176 ntBASIC20.9■□□□□ 0.94
CTDNEP1O95476 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 AC022616.7-201ENST00000525383 220 ntBASIC20.9■□□□□ 0.94
CTDNEP1O95476 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.9■□□□□ 0.94
CTDNEP1O95476 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CTDNEP1O95476 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 LINC01311-201ENST00000565162 1445 ntBASIC20.89■□□□□ 0.94
CTDNEP1O95476 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
CTDNEP1O95476 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.89■□□□□ 0.94
CTDNEP1O95476 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.89■□□□□ 0.93
CTDNEP1O95476 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CTDNEP1O95476 AC009949.1-201ENST00000623048 1830 ntBASIC20.89■□□□□ 0.93
CTDNEP1O95476 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms