Protein–RNA interactions for Protein: Q9Y5I7

CLDN16, Claudin-16, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN16Q9Y5I7 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLDN16Q9Y5I7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLDN16Q9Y5I7 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 KRT17P6-201ENST00000453795 1220 ntBASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AC011840.4-201ENST00000578471 627 ntBASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AL138831.2-201ENST00000606564 490 ntBASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 AC125634.1-201ENST00000438758 1403 ntBASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CLDN16Q9Y5I7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 NOC2LP1-202ENST00000452600 2235 ntBASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CLDN16Q9Y5I7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms