Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC8.68□□□□□ -1.021e-8■■□□□ 14.1
UPF1Q92900 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.38■■■□□ 2.453e-6■■□□□ 14.1
UPF1Q92900 RFFL-205ENST00000415395 1706 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.243e-6■■□□□ 14.1
UPF1Q92900 ARL4A-203ENST00000396663 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.347e-9■■□□□ 14.1
UPF1Q92900 TAL1-203ENST00000459729 1796 ntTSL 1 (best)27.33■■□□□ 1.979e-13■■□□□ 14.1
UPF1Q92900 EAF1-201ENST00000396842 4690 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.584e-7■■□□□ 14.1
UPF1Q92900 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.533e-6■■□□□ 14.1
UPF1Q92900 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.62e-6■■□□□ 14.1
UPF1Q92900 RNF10-208ENST00000537376 328 ntTSL 323.77■■□□□ 1.42e-6■■□□□ 14.1
UPF1Q92900 GAB3-202ENST00000369575 4718 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.812e-7■■□□□ 14.1
UPF1Q92900 GAB3-206ENST00000496390 4240 ntTSL 1 (best)7.69□□□□□ -1.182e-7■■□□□ 14.1
UPF1Q92900 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.164e-8■■□□□ 14.1
UPF1Q92900 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.88■□□□□ 0.454e-8■■□□□ 14.1
UPF1Q92900 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.66■□□□□ 0.424e-8■■□□□ 14.1
UPF1Q92900 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.4■□□□□ 0.384e-8■■□□□ 14.1
UPF1Q92900 SERINC2-204ENST00000491976 2807 ntTSL 217.37■□□□□ 0.374e-8■■□□□ 14.1
UPF1Q92900 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC32.13■■■□□ 2.732e-37■■□□□ 14.1
UPF1Q92900 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.78■■■□□ 2.522e-37■■□□□ 14.1
UPF1Q92900 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.72■■□□□ 1.552e-37■■□□□ 14.1
UPF1Q92900 RDX-211ENST00000530749 2558 ntTSL 223.08■■□□□ 1.292e-37■■□□□ 14.1
UPF1Q92900 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.63■□□□□ 0.892e-37■■□□□ 14.1
UPF1Q92900 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.262e-37■■□□□ 14.1
UPF1Q92900 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.72□□□□□ -0.052e-37■■□□□ 14.1
UPF1Q92900 RDX-203ENST00000527537 3403 ntTSL 1 (best)6.44□□□□□ -1.382e-37■■□□□ 14.1
UPF1Q92900 RDX-213ENST00000532461 3286 ntTSL 1 (best)5.89□□□□□ -1.472e-37■■□□□ 14.1
UPF1Q92900 AC019080.1-203ENST00000430416 889 ntTSL 1 (best)16.28■□□□□ 0.29e-9■■□□□ 14.1
UPF1Q92900 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC13.44□□□□□ -0.269e-9■■□□□ 14.1
UPF1Q92900 AC019080.1-202ENST00000456746 5147 ntTSL 28.78□□□□□ -19e-9■■□□□ 14.1
UPF1Q92900 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC7.72□□□□□ -1.179e-9■■□□□ 14.1
UPF1Q92900 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.412e-8■■□□□ 14.1
UPF1Q92900 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC26.12■■□□□ 1.778e-11■■□□□ 14
UPF1Q92900 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.648e-11■■□□□ 14
UPF1Q92900 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.031e-6■■□□□ 14
UPF1Q92900 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC14.31□□□□□ -0.121e-6■■□□□ 14
UPF1Q92900 TSPAN31-202ENST00000546922 892 ntTSL 311.96□□□□□ -0.491e-7■■□□□ 14
UPF1Q92900 GNAS-243ENST00000484504 662 ntTSL 238.31■■■■□ 3.728e-9■■□□□ 14
UPF1Q92900 GNAS-244ENST00000485673 715 ntTSL 538.31■■■■□ 3.728e-9■■□□□ 14
UPF1Q92900 GNAS-228ENST00000469431 702 ntTSL 537.82■■■■□ 3.648e-9■■□□□ 14
UPF1Q92900 GNAS-235ENST00000478585 543 ntTSL 237.82■■■■□ 3.648e-9■■□□□ 14
UPF1Q92900 GNAS-257ENST00000604005 693 ntTSL 337.82■■■■□ 3.648e-9■■□□□ 14
UPF1Q92900 GNAS-224ENST00000464960 986 ntTSL 237.3■■■■□ 3.568e-9■■□□□ 14
UPF1Q92900 GNAS-229ENST00000470512 913 ntTSL 536.12■■■■□ 3.378e-9■■□□□ 14
UPF1Q92900 GNAS-237ENST00000480232 893 ntTSL 535.44■■■■□ 3.268e-9■■□□□ 14
UPF1Q92900 GNAS-234ENST00000477931 1663 ntTSL 1 (best)31.21■■■□□ 2.598e-9■■□□□ 14
UPF1Q92900 GNAS-226ENST00000467321 733 ntTSL 526.93■■□□□ 1.98e-9■■□□□ 14
UPF1Q92900 GNAS-220ENST00000461152 278 ntTSL 526.72■■□□□ 1.878e-9■■□□□ 14
UPF1Q92900 GNAS-230ENST00000472183 911 ntTSL 326.42■■□□□ 1.828e-9■■□□□ 14
UPF1Q92900 GNAS-250ENST00000491348 1068 ntTSL 326.42■■□□□ 1.828e-9■■□□□ 14
UPF1Q92900 GNAS-238ENST00000480975 1534 ntTSL 525.52■■□□□ 1.688e-9■■□□□ 14
UPF1Q92900 GNAS-221ENST00000462499 492 ntTSL 222.02■■□□□ 1.128e-9■■□□□ 14
UPF1Q92900 GNAS-241ENST00000482112 704 ntTSL 322.02■■□□□ 1.128e-9■■□□□ 14
UPF1Q92900 GNAS-240ENST00000481768 1903 ntTSL 1 (best)21.03■□□□□ 0.968e-9■■□□□ 14
UPF1Q92900 GNAS-223ENST00000464788 583 ntTSL 220.76■□□□□ 0.918e-9■■□□□ 14
UPF1Q92900 GNAS-206ENST00000349036 581 ntTSL 520.09■□□□□ 0.818e-9■■□□□ 14
UPF1Q92900 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.96■□□□□ 0.798e-9■■□□□ 14
UPF1Q92900 GNAS-249ENST00000490374 675 ntTSL 319.53■□□□□ 0.728e-9■■□□□ 14
UPF1Q92900 GNAS-247ENST00000488546 897 ntTSL 518.99■□□□□ 0.638e-9■■□□□ 14
UPF1Q92900 GNAS-219ENST00000453292 632 ntTSL 518■□□□□ 0.478e-9■■□□□ 14
UPF1Q92900 GNAS-239ENST00000481039 756 ntTSL 517.84■□□□□ 0.458e-9■■□□□ 14
UPF1Q92900 GNAS-217ENST00000423897 736 ntTSL 317.28■□□□□ 0.368e-9■■□□□ 14
UPF1Q92900 GNAS-252ENST00000493744 812 ntTSL 217.28■□□□□ 0.368e-9■■□□□ 14
UPF1Q92900 GNAS-218ENST00000450130 595 ntTSL 515.56■□□□□ 0.088e-9■■□□□ 14
UPF1Q92900 GNAS-216ENST00000419558 729 ntTSL 315.28■□□□□ 0.048e-9■■□□□ 14
UPF1Q92900 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.68□□□□□ -0.228e-9■■□□□ 14
UPF1Q92900 GNAS-222ENST00000464624 3764 ntTSL 513.47□□□□□ -0.258e-9■■□□□ 14
UPF1Q92900 GNAS-227ENST00000468895 583 ntTSL 313.34□□□□□ -0.278e-9■■□□□ 14
UPF1Q92900 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC11.99□□□□□ -0.498e-9■■□□□ 14
UPF1Q92900 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC10.87□□□□□ -0.678e-9■■□□□ 14
UPF1Q92900 GNAS-208ENST00000371075 2551 ntTSL 1 (best) BASIC10.31□□□□□ -0.768e-9■■□□□ 14
UPF1Q92900 GNAS-225ENST00000467227 543 ntTSL 39.37□□□□□ -0.918e-9■■□□□ 14
UPF1Q92900 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.333e-6■■□□□ 14
UPF1Q92900 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.39□□□□□ -1.393e-6■■□□□ 14
UPF1Q92900 MXD4-202ENST00000510822 561 ntTSL 323.76■■□□□ 1.391e-10■■□□□ 14
UPF1Q92900 MXD4-205ENST00000515378 522 ntTSL 222.72■■□□□ 1.231e-10■■□□□ 14
UPF1Q92900 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.223e-7■■□□□ 14
UPF1Q92900 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.44e-8■■□□□ 14
UPF1Q92900 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.17□□□□□ -1.584e-8■■□□□ 14
UPF1Q92900 FAM219B-206ENST00000563671 865 ntTSL 232.95■■■□□ 2.872e-7■■□□□ 14
UPF1Q92900 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.552e-7■■□□□ 14
UPF1Q92900 FAM219B-215ENST00000566894 4706 ntTSL 215.37■□□□□ 0.052e-7■■□□□ 14
UPF1Q92900 FAM219B-217ENST00000569524 3219 ntTSL 214.61□□□□□ -0.072e-7■■□□□ 14
UPF1Q92900 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.122e-7■■□□□ 14
UPF1Q92900 FAM219B-213ENST00000566132 624 ntTSL 313.75□□□□□ -0.212e-7■■□□□ 14
UPF1Q92900 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.275e-11■■□□□ 14
UPF1Q92900 LINC00963-201ENST00000412141 739 ntTSL 1 (best)16.85■□□□□ 0.292e-6■■□□□ 14
UPF1Q92900 LINC00963-216ENST00000623185 786 ntTSL 5 BASIC16.27■□□□□ 0.22e-6■■□□□ 14
UPF1Q92900 LINC00963-204ENST00000427778 382 ntTSL 213.2□□□□□ -0.32e-6■■□□□ 14
UPF1Q92900 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.092e-7■■□□□ 14
UPF1Q92900 TMED5-203ENST00000370290 3847 ntTSL 1 (best)14.12□□□□□ -0.152e-7■■□□□ 14
UPF1Q92900 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.559e-7■■□□□ 14
UPF1Q92900 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.34■□□□□ 0.379e-7■■□□□ 14
UPF1Q92900 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.241e-10■■□□□ 14
UPF1Q92900 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.081e-10■■□□□ 14
UPF1Q92900 SLC2A6-205ENST00000485978 3417 ntTSL 515.04■□□□□ -09e-7■■□□□ 14
UPF1Q92900 PPP2R2A-202ENST00000380737 3940 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.982e-6■■□□□ 14
UPF1Q92900 PPP2R2A-203ENST00000517754 2357 ntTSL 26.54□□□□□ -1.362e-6■■□□□ 14
UPF1Q92900 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.585e-7■■□□□ 14
UPF1Q92900 HAUS5-208ENST00000590994 883 ntTSL 521.03■□□□□ 0.965e-9■■□□□ 14
UPF1Q92900 HAUS5-206ENST00000587439 2758 ntTSL 216.54■□□□□ 0.245e-9■■□□□ 14
UPF1Q92900 HAUS5-205ENST00000585968 2762 ntTSL 1 (best)15.58■□□□□ 0.085e-9■■□□□ 14
Retrieved 100 of 15,879 protein–RNA pairs in 98.9 ms