RNA–Protein interactions for RNA: ENST00000298875.8

CPSF2-201, Transcript of cleavage and polyadenylation specific factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF2, Length 13,035 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF2-201ENST00000298875 MYT1Q01538 1121 aa9.31□□□□□ -0.92
CPSF2-201ENST00000298875 DCAF8L2P0C7V8 631 aa9.3□□□□□ -0.92
CPSF2-201ENST00000298875 PELP1Q8IZL8 1130 aaKnown RBP9.19□□□□□ -0.94
CPSF2-201ENST00000298875 NISCHQ9Y2I1 1504 aa9.08□□□□□ -0.96
CPSF2-201ENST00000298875 SUPT5HO00267 1087 aaKnown RBP8.9□□□□□ -0.98
CPSF2-201ENST00000298875 EHMT2Q96KQ7 1210 aa8.84□□□□□ -0.99
CPSF2-201ENST00000298875 SHROOM4Q9ULL8 1493 aa8.73□□□□□ -1.01
CPSF2-201ENST00000298875 ERICH6Q7L0X2 663 aa8.68□□□□□ -1.02
CPSF2-201ENST00000298875 CCER1Q8TC90 406 aaPredicted RBP8.63□□□□□ -1.03
CPSF2-201ENST00000298875 APLP2Q06481 763 aa8.62□□□□□ -1.03
CPSF2-201ENST00000298875 TTBK1Q5TCY1 1321 aaPredicted RBP8.6□□□□□ -1.03
CPSF2-201ENST00000298875 CENPBP07199 599 aaPredicted RBP8.52□□□□□ -1.05
CPSF2-201ENST00000298875 YTHDC1Q96MU7 727 aaKnown RBP8.5□□□□□ -1.05
CPSF2-201ENST00000298875 FAM9AQ8IZU1 332 aaPredicted RBP8.49□□□□□ -1.05
CPSF2-201ENST00000298875 PCGF6Q9BYE7 350 aa8.48□□□□□ -1.05
CPSF2-201ENST00000298875 ZEB1P37275 1124 aaPredicted RBP8.41□□□□□ -1.06
CPSF2-201ENST00000298875 RANGAP1P46060 587 aaPredicted RBP8.38□□□□□ -1.07
CPSF2-201ENST00000298875 NEFLP07196 543 aa8.38□□□□□ -1.07
CPSF2-201ENST00000298875 ATP1B4Q9UN42 357 aaPredicted RBP8.31□□□□□ -1.08
CPSF2-201ENST00000298875 DAXXQ9UER7 740 aaPredicted RBP8.23□□□□□ -1.09
CPSF2-201ENST00000298875 TRIM41Q8WV44 630 aa8.2□□□□□ -1.1
CPSF2-201ENST00000298875 UBTFP17480 764 aaKnown RBP8.16□□□□□ -1.1
CPSF2-201ENST00000298875 PPARGC1BQ86YN6 1023 aaKnown RBP8.13□□□□□ -1.11
CPSF2-201ENST00000298875 POLR3GLQ9BT43 218 aa8.1□□□□□ -1.11
CPSF2-201ENST00000298875 ZNF316A6NFI3 1004 aaPredicted RBP8.05□□□□□ -1.12
CPSF2-201ENST00000298875 CCDC180Q9P1Z9 1646 aa8.05□□□□□ -1.12
CPSF2-201ENST00000298875 CNGB1Q14028 1251 aaPredicted RBP8.04□□□□□ -1.12
CPSF2-201ENST00000298875 MYT1LQ9UL68 1186 aa8.03□□□□□ -1.12
CPSF2-201ENST00000298875 TRIM26Q12899 539 aaPredicted RBP8.02□□□□□ -1.13
CPSF2-201ENST00000298875 RTL5Q5HYW3 569 aaPredicted RBP8.02□□□□□ -1.13
CPSF2-201ENST00000298875 ITGAEP38570 1179 aa8.01□□□□□ -1.13
CPSF2-201ENST00000298875 GLIPR1L2Q4G1C9 344 aa8.01□□□□□ -1.13
CPSF2-201ENST00000298875 HRCP23327 699 aa8□□□□□ -1.13
CPSF2-201ENST00000298875 CLSPNQ9HAW4 1339 aa7.98□□□□□ -1.13
CPSF2-201ENST00000298875 CHIC1Q5VXU3 224 aa7.96□□□□□ -1.13
CPSF2-201ENST00000298875 SLC4A1APQ9BWU0 796 aaKnown RBP7.96□□□□□ -1.14
CPSF2-201ENST00000298875 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.93□□□□□ -1.14
CPSF2-201ENST00000298875 HNRNPUL2Q1KMD3 747 aaKnown RBP7.93□□□□□ -1.14
CPSF2-201ENST00000298875 DIEXFQ68CQ4 756 aaKnown RBP7.88□□□□□ -1.15
CPSF2-201ENST00000298875 ABCC9O60706 1549 aa7.88□□□□□ -1.15
CPSF2-201ENST00000298875 RB1CC1Q8TDY2 1594 aa7.86□□□□□ -1.15
CPSF2-201ENST00000298875 BCANQ96GW7 911 aa7.85□□□□□ -1.15
CPSF2-201ENST00000298875 LOC105371045A0A1W2PR82 267 aa7.81□□□□□ -1.16
CPSF2-201ENST00000298875 CDK11AQ9UQ88 783 aaPredicted RBP7.79□□□□□ -1.16
CPSF2-201ENST00000298875 NACADO15069 1562 aa7.79□□□□□ -1.16
CPSF2-201ENST00000298875 GTF3C3Q9Y5Q9 886 aa7.78□□□□□ -1.16
CPSF2-201ENST00000298875 FAM50AQ14320 339 aaKnown RBP7.78□□□□□ -1.16
CPSF2-201ENST00000298875 BCL11AQ9H165 835 aa7.78□□□□□ -1.16
CPSF2-201ENST00000298875 ZBTB47Q9UFB7 747 aaPredicted RBP7.78□□□□□ -1.16
CPSF2-201ENST00000298875 CANXP27824 592 aaKnown RBP7.75□□□□□ -1.17
CPSF2-201ENST00000298875 NEUROD1Q13562 356 aa7.75□□□□□ -1.17
CPSF2-201ENST00000298875 TRIM52Q96A61 297 aa7.74□□□□□ -1.17
CPSF2-201ENST00000298875 SLC24A1O60721 1099 aa7.74□□□□□ -1.17
CPSF2-201ENST00000298875 ZNF326Q5BKZ1 582 aaKnown RBP7.73□□□□□ -1.17
CPSF2-201ENST00000298875 ANP32CO43423 234 aa7.71□□□□□ -1.18
CPSF2-201ENST00000298875 ANP32AP39687 249 aaKnown RBP7.7□□□□□ -1.18
CPSF2-201ENST00000298875 NPM2Q86SE8 214 aaKnown RBP7.69□□□□□ -1.18
CPSF2-201ENST00000298875 EIF5BO60841 1220 aaKnown RBP7.69□□□□□ -1.18
CPSF2-201ENST00000298875 MYO15BQ96JP2 1530 aa7.65□□□□□ -1.18
CPSF2-201ENST00000298875 ANP32BQ92688 251 aaKnown RBP7.64□□□□□ -1.19
CPSF2-201ENST00000298875 NEFMP07197 916 aa7.6□□□□□ -1.19
CPSF2-201ENST00000298875 HSP90AA1P07900 732 aaKnown RBP7.59□□□□□ -1.19
CPSF2-201ENST00000298875 ACIN1Q9UKV3 1341 aaKnown RBP7.59□□□□□ -1.19
CPSF2-201ENST00000298875 DCAF1Q9Y4B6 1507 aa7.59□□□□□ -1.2
CPSF2-201ENST00000298875 TNNT2P45379 298 aaPredicted RBP7.57□□□□□ -1.2
CPSF2-201ENST00000298875 ARXQ96QS3 562 aa7.56□□□□□ -1.2
CPSF2-201ENST00000298875 FKBP8Q14318 412 aa7.56□□□□□ -1.2
CPSF2-201ENST00000298875 NBR1Q14596 966 aa7.55□□□□□ -1.2
CPSF2-201ENST00000298875 UPF2Q9HAU5 1272 aaKnown RBP7.55□□□□□ -1.2
CPSF2-201ENST00000298875 NCLP19338 710 aaKnown RBP7.54□□□□□ -1.2
CPSF2-201ENST00000298875 ARID3CA6NKF2 412 aa7.5□□□□□ -1.21
CPSF2-201ENST00000298875 ANP32EQ9BTT0 268 aa7.5□□□□□ -1.21
CPSF2-201ENST00000298875 NPM1P06748 294 aaKnown RBP eCLIP7.5□□□□□ -1.21
CPSF2-201ENST00000298875 FBLN2P98095 1184 aa7.49□□□□□ -1.21
CPSF2-201ENST00000298875 TRIM44Q96DX7 344 aaPredicted RBP7.49□□□□□ -1.21
CPSF2-201ENST00000298875 ZCCHC6Q5VYS8 1495 aaKnown RBP7.48□□□□□ -1.21
CPSF2-201ENST00000298875 HNRNPUQ00839 825 aaKnown RBP eCLIP7.47□□□□□ -1.21
CPSF2-201ENST00000298875 PABPN1Q86U42 306 aaKnown RBP eCLIP7.47□□□□□ -1.21
CPSF2-201ENST00000298875 FAM9BQ8IZU0 186 aa7.47□□□□□ -1.21
CPSF2-201ENST00000298875 TONSLQ96HA7 1378 aa7.46□□□□□ -1.22
CPSF2-201ENST00000298875 SALL2Q9Y467 1007 aaPredicted RBP7.45□□□□□ -1.22
CPSF2-201ENST00000298875 ZNF777Q9ULD5 760 aaPredicted RBP7.45□□□□□ -1.22
CPSF2-201ENST00000298875 P3H3Q8IVL6 736 aa7.44□□□□□ -1.22
CPSF2-201ENST00000298875 CDK11BP21127 795 aaKnown RBP7.43□□□□□ -1.22
CPSF2-201ENST00000298875 SCRIBQ14160 1630 aa7.43□□□□□ -1.22
CPSF2-201ENST00000298875 CCDC136Q96JN2 1154 aa7.43□□□□□ -1.22
CPSF2-201ENST00000298875 ERICH6BQ5W0A0 696 aa7.42□□□□□ -1.22
CPSF2-201ENST00000298875 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.4□□□□□ -1.22
CPSF2-201ENST00000298875 IRX6P78412 446 aaPredicted RBP7.4□□□□□ -1.23
CPSF2-201ENST00000298875 ARID4BQ4LE39 1312 aaPredicted RBP7.4□□□□□ -1.23
CPSF2-201ENST00000298875 PLPPR3Q6T4P5 718 aa7.39□□□□□ -1.23
CPSF2-201ENST00000298875 DDX10Q13206 875 aaKnown RBP7.39□□□□□ -1.23
CPSF2-201ENST00000298875 WDR43Q15061 677 aaKnown RBP eCLIP7.38□□□□□ -1.23
CPSF2-201ENST00000298875 ERCC6Q03468 1493 aa7.38□□□□□ -1.23
CPSF2-201ENST00000298875 CHGAP10645 457 aaKnown RBP7.38□□□□□ -1.23
CPSF2-201ENST00000298875 MYH16Q9H6N6 1097 aa7.38□□□□□ -1.23
CPSF2-201ENST00000298875 STAG3Q9UJ98 1225 aa7.38□□□□□ -1.23
CPSF2-201ENST00000298875 TMC1Q8TDI8 760 aa7.37□□□□□ -1.23
CPSF2-201ENST00000298875 ESF1Q9H501 851 aaKnown RBP7.37□□□□□ -1.23
CPSF2-201ENST00000298875 PDS5BQ9NTI5 1447 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms