Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 AL121603.2-201ENST00000557373 2117 ntBASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
LINC01558Q9Y6Z2 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 MED17-221ENST00000639724 2317 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 CASK-201ENST00000378154 2494 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC01558Q9Y6Z2 PROC-203ENST00000409048 1586 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC01558Q9Y6Z2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 LINC01003-201ENST00000564834 1764 ntBASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LINC01558Q9Y6Z2 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
LINC01558Q9Y6Z2 PREB-202ENST00000406567 1910 ntTSL 5 BASIC12.96□□□□□ -0.33
LINC01558Q9Y6Z2 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LINC01558Q9Y6Z2 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LINC01558Q9Y6Z2 SLC25A24-204ENST00000569674 2357 ntBASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 AC092803.2-201ENST00000564287 1899 ntBASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
LINC01558Q9Y6Z2 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LINC01558Q9Y6Z2 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LINC01558Q9Y6Z2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC12.91□□□□□ -0.34
LINC01558Q9Y6Z2 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC12.9□□□□□ -0.34
LINC01558Q9Y6Z2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC01558Q9Y6Z2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC01558Q9Y6Z2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LINC01558Q9Y6Z2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.35
LINC01558Q9Y6Z2 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
LINC01558Q9Y6Z2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC12.9□□□□□ -0.35
LINC01558Q9Y6Z2 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC12.89□□□□□ -0.35
LINC01558Q9Y6Z2 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
LINC01558Q9Y6Z2 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms