Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CFAP54Q96N23 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
CFAP54Q96N23 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CFAP54Q96N23 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.76■■□□□ 1.55
CFAP54Q96N23 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CFAP54Q96N23 PEX7-203ENST00000541292 945 ntTSL 5 BASIC24.76■■□□□ 1.55
CFAP54Q96N23 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CFAP54Q96N23 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CFAP54Q96N23 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.75■■□□□ 1.55
CFAP54Q96N23 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.74■■□□□ 1.55
CFAP54Q96N23 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.74■■□□□ 1.55
CFAP54Q96N23 ZNRF2P3-201ENST00000424200 374 ntBASIC24.73■■□□□ 1.55
CFAP54Q96N23 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.73■■□□□ 1.55
CFAP54Q96N23 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
CFAP54Q96N23 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.73■■□□□ 1.55
CFAP54Q96N23 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.73■■□□□ 1.55
CFAP54Q96N23 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CFAP54Q96N23 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
CFAP54Q96N23 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CFAP54Q96N23 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CFAP54Q96N23 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
CFAP54Q96N23 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CFAP54Q96N23 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.7■■□□□ 1.55
CFAP54Q96N23 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CFAP54Q96N23 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
CFAP54Q96N23 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.7■■□□□ 1.54
CFAP54Q96N23 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
CFAP54Q96N23 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CFAP54Q96N23 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CFAP54Q96N23 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.69■■□□□ 1.54
CFAP54Q96N23 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CFAP54Q96N23 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.69■■□□□ 1.54
CFAP54Q96N23 MIR5787-201ENST00000611784 55 ntBASIC24.69■■□□□ 1.54
CFAP54Q96N23 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CFAP54Q96N23 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CFAP54Q96N23 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.69■■□□□ 1.54
CFAP54Q96N23 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CFAP54Q96N23 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CFAP54Q96N23 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.68■■□□□ 1.54
CFAP54Q96N23 AC093536.1-201ENST00000569153 554 ntBASIC24.68■■□□□ 1.54
CFAP54Q96N23 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CFAP54Q96N23 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.67■■□□□ 1.54
CFAP54Q96N23 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
CFAP54Q96N23 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.67■■□□□ 1.54
CFAP54Q96N23 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CFAP54Q96N23 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.67■■□□□ 1.54
CFAP54Q96N23 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CFAP54Q96N23 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.66■■□□□ 1.54
CFAP54Q96N23 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CFAP54Q96N23 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CFAP54Q96N23 KRT125P-201ENST00000546827 989 ntBASIC24.65■■□□□ 1.54
CFAP54Q96N23 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.65■■□□□ 1.54
CFAP54Q96N23 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
CFAP54Q96N23 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CFAP54Q96N23 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CFAP54Q96N23 AC133561.4-201ENST00000566112 224 ntBASIC24.65■■□□□ 1.54
CFAP54Q96N23 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CFAP54Q96N23 MIR4787-201ENST00000607364 84 ntBASIC24.64■■□□□ 1.54
CFAP54Q96N23 AC010864.1-201ENST00000609407 1511 ntBASIC24.64■■□□□ 1.54
CFAP54Q96N23 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CFAP54Q96N23 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CFAP54Q96N23 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.63■■□□□ 1.53
CFAP54Q96N23 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.63■■□□□ 1.53
CFAP54Q96N23 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CFAP54Q96N23 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CFAP54Q96N23 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.63■■□□□ 1.53
CFAP54Q96N23 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CFAP54Q96N23 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.63■■□□□ 1.53
CFAP54Q96N23 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CFAP54Q96N23 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CFAP54Q96N23 UNC93B8-201ENST00000511903 705 ntBASIC24.62■■□□□ 1.53
CFAP54Q96N23 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC24.62■■□□□ 1.53
CFAP54Q96N23 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.62■■□□□ 1.53
CFAP54Q96N23 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CFAP54Q96N23 AC135279.3-201ENST00000610945 1311 ntBASIC24.61■■□□□ 1.53
CFAP54Q96N23 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CFAP54Q96N23 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
CFAP54Q96N23 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC24.61■■□□□ 1.53
CFAP54Q96N23 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.61■■□□□ 1.53
CFAP54Q96N23 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.6■■□□□ 1.53
CFAP54Q96N23 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.6■■□□□ 1.53
CFAP54Q96N23 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CFAP54Q96N23 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.6■■□□□ 1.53
CFAP54Q96N23 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.6■■□□□ 1.53
CFAP54Q96N23 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.59■■□□□ 1.53
CFAP54Q96N23 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CFAP54Q96N23 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.59■■□□□ 1.53
CFAP54Q96N23 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.59■■□□□ 1.53
CFAP54Q96N23 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.59■■□□□ 1.53
CFAP54Q96N23 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CFAP54Q96N23 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CFAP54Q96N23 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CFAP54Q96N23 LONRF2P2-201ENST00000439212 571 ntBASIC24.58■■□□□ 1.52
CFAP54Q96N23 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CFAP54Q96N23 AC127502.1-201ENST00000399971 1502 ntBASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms