Protein–RNA interactions for Protein: Q8NC42

RNF149, E3 ubiquitin-protein ligase RNF149, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF149Q8NC42 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
RNF149Q8NC42 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF149Q8NC42 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.32■■□□□ 1.96
RNF149Q8NC42 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
RNF149Q8NC42 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
RNF149Q8NC42 SMPD5-203ENST00000639008 1464 ntBASIC27.32■■□□□ 1.96
RNF149Q8NC42 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RNF149Q8NC42 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
RNF149Q8NC42 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC27.31■■□□□ 1.96
RNF149Q8NC42 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RNF149Q8NC42 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.31■■□□□ 1.96
RNF149Q8NC42 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RNF149Q8NC42 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC27.3■■□□□ 1.96
RNF149Q8NC42 U85056.1-201ENST00000616429 682 ntBASIC27.3■■□□□ 1.96
RNF149Q8NC42 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.3■■□□□ 1.96
RNF149Q8NC42 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
RNF149Q8NC42 AC007029.1-201ENST00000604183 313 ntBASIC27.29■■□□□ 1.96
RNF149Q8NC42 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RNF149Q8NC42 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
RNF149Q8NC42 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF149Q8NC42 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.27■■□□□ 1.96
RNF149Q8NC42 AC025884.2-201ENST00000553429 711 ntBASIC27.27■■□□□ 1.96
RNF149Q8NC42 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
RNF149Q8NC42 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
RNF149Q8NC42 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC27.26■■□□□ 1.95
RNF149Q8NC42 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.26■■□□□ 1.95
RNF149Q8NC42 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC27.25■■□□□ 1.95
RNF149Q8NC42 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RNF149Q8NC42 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF149Q8NC42 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
RNF149Q8NC42 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC27.25■■□□□ 1.95
RNF149Q8NC42 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
RNF149Q8NC42 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.25■■□□□ 1.95
RNF149Q8NC42 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
RNF149Q8NC42 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
RNF149Q8NC42 AC142086.6-201ENST00000621154 1765 ntBASIC27.25■■□□□ 1.95
RNF149Q8NC42 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
RNF149Q8NC42 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC27.23■■□□□ 1.95
RNF149Q8NC42 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.23■■□□□ 1.95
RNF149Q8NC42 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.23■■□□□ 1.95
RNF149Q8NC42 BX255925.1-201ENST00000566954 1854 ntBASIC27.23■■□□□ 1.95
RNF149Q8NC42 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.22■■□□□ 1.95
RNF149Q8NC42 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC27.22■■□□□ 1.95
RNF149Q8NC42 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC27.22■■□□□ 1.95
RNF149Q8NC42 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
RNF149Q8NC42 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
RNF149Q8NC42 AL359504.2-201ENST00000605506 1601 ntBASIC27.21■■□□□ 1.95
RNF149Q8NC42 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
RNF149Q8NC42 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
RNF149Q8NC42 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
RNF149Q8NC42 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
RNF149Q8NC42 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
RNF149Q8NC42 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
RNF149Q8NC42 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.2■■□□□ 1.94
RNF149Q8NC42 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC27.2■■□□□ 1.94
RNF149Q8NC42 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC27.19■■□□□ 1.94
RNF149Q8NC42 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
RNF149Q8NC42 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
RNF149Q8NC42 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.19■■□□□ 1.94
RNF149Q8NC42 AL449106.1-201ENST00000608517 1980 ntBASIC27.18■■□□□ 1.94
RNF149Q8NC42 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC27.18■■□□□ 1.94
RNF149Q8NC42 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC27.18■■□□□ 1.94
RNF149Q8NC42 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
RNF149Q8NC42 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
RNF149Q8NC42 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
RNF149Q8NC42 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
RNF149Q8NC42 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
RNF149Q8NC42 RP9P-202ENST00000450133 1212 ntBASIC27.16■■□□□ 1.94
RNF149Q8NC42 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
RNF149Q8NC42 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
RNF149Q8NC42 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
RNF149Q8NC42 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.15■■□□□ 1.94
RNF149Q8NC42 AC009831.1-201ENST00000580420 1582 ntBASIC27.15■■□□□ 1.94
RNF149Q8NC42 KRT18P60-201ENST00000312876 1297 ntBASIC27.15■■□□□ 1.94
RNF149Q8NC42 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.15■■□□□ 1.94
RNF149Q8NC42 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RNF149Q8NC42 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
RNF149Q8NC42 AC012354.3-201ENST00000623734 483 ntBASIC27.15■■□□□ 1.94
RNF149Q8NC42 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.14■■□□□ 1.94
RNF149Q8NC42 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
RNF149Q8NC42 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
RNF149Q8NC42 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
RNF149Q8NC42 AC133552.2-201ENST00000619106 1032 ntBASIC27.14■■□□□ 1.94
RNF149Q8NC42 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
RNF149Q8NC42 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
RNF149Q8NC42 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC27.13■■□□□ 1.93
RNF149Q8NC42 GFER-205ENST00000569451 517 ntTSL 5 BASIC27.13■■□□□ 1.93
RNF149Q8NC42 MIR3960-201ENST00000583311 91 ntBASIC27.13■■□□□ 1.93
RNF149Q8NC42 AC026202.3-201ENST00000600805 1127 ntBASIC27.13■■□□□ 1.93
RNF149Q8NC42 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC27.13■■□□□ 1.93
RNF149Q8NC42 AC093536.1-201ENST00000569153 554 ntBASIC27.12■■□□□ 1.93
RNF149Q8NC42 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
RNF149Q8NC42 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
RNF149Q8NC42 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC27.11■■□□□ 1.93
RNF149Q8NC42 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.11■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms